View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7913_low_3 (Length: 570)
Name: NF7913_low_3
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 37 - 433
Target Start/End: Original strand, 48842676 - 48843072
Alignment:
| Q |
37 |
acagggcccgtataatctaattgcttttgtttcaaataaataaatttctgtaatttcactgttagattaatttaaaaacttgaatttccttgcagagaca |
136 |
Q |
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| T |
48842676 |
acagagcccgtataatctaattgcttttgtttcaaataaataaatttctgtaatttcactgttagattaatttaaaaacttgaatttccttgcagagaca |
48842775 |
T |
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| Q |
137 |
atgcatagaaactacatgcgtgattttacatttcaaatctaaagagcgctctatatggcacatactgttattgtatacttacacatttatgcaatgtgac |
236 |
Q |
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| T |
48842776 |
atgcatagaaactacatgcgtgattttacatttcaaatctaaagagcgctctatatggcacatactgttattgtatacttacacatttatgcaatgtgac |
48842875 |
T |
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| Q |
237 |
accacttatatggtataaccgtctccatttagtccattataacgttataataacaaactataaaattaagaataatactaatgaatatcctaaaagcatt |
336 |
Q |
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| T |
48842876 |
accacttatatggtataaccgtctccatttagtccattataacgttataataacaaactataaaattaagaataatactaatgaatatcctaaaagcatt |
48842975 |
T |
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| Q |
337 |
gattaagaaaccnnnnnnngtaattttatataaacaagtgttataattatttacattgataaaaataacttcnnnnnnncctaatatggccttacct |
433 |
Q |
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| T |
48842976 |
gattaagaaaccaaaaaaagtaattttatataaacaagtgttataattatttacattgataaaaataacttatttttttcctaatatggccttacct |
48843072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 433 - 553
Target Start/End: Original strand, 48843095 - 48843215
Alignment:
| Q |
433 |
tttccatagtctgtataatatcagtggtttcacatagctcttaaatcaatgttgctcatgctgaccaaaaataatgaaccaaattcgtgaaaaaacaaaa |
532 |
Q |
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| T |
48843095 |
tttccatagtctgtataatataagtggtttcacatagctcttaaatcaatgttgctcatgatgaccaaaaataatgaaccaaattcgtgaagaaacaaaa |
48843194 |
T |
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| Q |
533 |
tgcactcaatcgattgatatt |
553 |
Q |
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| T |
48843195 |
tgcactcaatcgattgatatt |
48843215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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