View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7913_low_4 (Length: 431)
Name: NF7913_low_4
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 44257907 - 44257675
Alignment:
| Q |
5 |
tgtatctgattgatttgtgtctaatcatgctgttaag----tatatgtgccttattgcatgttta-----ctaccccaaatttgaacaagctagttattg |
95 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
44257907 |
tgtatctgattgatttgtgtcttatcatgctagcaaggatatatatgtgccttattgcatgtttagtttactaccccaaatttgaacaag----ttgttg |
44257812 |
T |
|
| Q |
96 |
cattgtgcagatactgccaagagtactcgacacgaataacaagatattgtcaatgtagatgcat-----ggaaatccgctatactatagcacaatgttgt |
190 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
44257811 |
cattctgcagatactgccaagagtactcgacacgaataataagatattgtcaatgtagatgcatggaatggaaatccgctatactatagcacaa---tgc |
44257715 |
T |
|
| Q |
191 |
tatatattttatttttggtcgagtagacattaaatcatag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44257714 |
tatatattttatttttggtcgagtagacattaaatcatag |
44257675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 249 - 382
Target Start/End: Complemental strand, 44257688 - 44257555
Alignment:
| Q |
249 |
acattaaatcatagttgtaagcaagcaaatcctggaataccagaccctctccaagccaaccatattttctaactcaat-aatcacttaaatcttcaaaca |
347 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
44257688 |
acattaaatcatagttgtaagcaagcaa-tcctggaatactagaccctctccaagccaagcatattttccaactcaattaatcacttaaatcttcaaaca |
44257590 |
T |
|
| Q |
348 |
tattttcgaactaaatatttccacatcagcatata |
382 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||| |
|
|
| T |
44257589 |
tattttcgaactaaatttttccacagcaggatata |
44257555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 414
Target Start/End: Complemental strand, 43715159 - 43715128
Alignment:
| Q |
383 |
aaaatggcaaattctatggtacatccaaaaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43715159 |
aaaatggcaaattctatggtacatccaaaaat |
43715128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 414
Target Start/End: Original strand, 19547486 - 19547515
Alignment:
| Q |
385 |
aatggcaaattctatggtacatccaaaaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19547486 |
aatggcaaattctatggtacatccaaaaat |
19547515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 266 - 385
Target Start/End: Original strand, 16694797 - 16694916
Alignment:
| Q |
266 |
taagcaagcaaatcctggaataccagaccct-ctccaagccaaccatattttctaactcaataatcacttaaatcttcaaacatattttcgaactaaata |
364 |
Q |
| |
|
||||||||||| || |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| | ||||||||| |
|
|
| T |
16694797 |
taagcaagcaa-tcttggaatactagacccttctccaagccaaccatattttcgaactcaataatcacttgaatcatcaaacatattattaaactaaata |
16694895 |
T |
|
| Q |
365 |
tttccacatcagcatataaaa |
385 |
Q |
| |
|
||| |||| ||| |||||||| |
|
|
| T |
16694896 |
tttgcacaacaggatataaaa |
16694916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 410
Target Start/End: Original strand, 11227620 - 11227649
Alignment:
| Q |
381 |
taaaaatggcaaattctatggtacatccaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11227620 |
taaaaatggcaaattctatggtacatccaa |
11227649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University