View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7913_low_5 (Length: 418)

Name: NF7913_low_5
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7913_low_5
NF7913_low_5
[»] scaffold0132 (4 HSPs)
scaffold0132 (30-246)||(421-637)
scaffold0132 (30-246)||(8381-8597)
scaffold0132 (289-402)||(301-410)
scaffold0132 (289-402)||(8261-8370)
[»] chr3 (15 HSPs)
chr3 (30-106)||(521861-521938)
chr3 (34-106)||(31788330-31788403)
chr3 (30-106)||(1561352-1561429)
chr3 (34-106)||(50612975-50613048)
chr3 (30-96)||(34624573-34624640)
chr3 (34-106)||(36517539-36517612)
chr3 (30-106)||(45166251-45166328)
chr3 (30-103)||(38176486-38176560)
chr3 (34-106)||(20912192-20912265)
chr3 (34-106)||(52546767-52546840)
chr3 (34-106)||(23643080-23643153)
chr3 (61-106)||(43203273-43203318)
chr3 (54-102)||(39145280-39145328)
chr3 (289-332)||(18732970-18733013)
chr3 (58-94)||(9496567-9496603)
[»] chr1 (13 HSPs)
chr1 (30-106)||(29095619-29095696)
chr1 (30-106)||(34475924-34476001)
chr1 (30-106)||(34807961-34808038)
chr1 (30-106)||(24135780-24135855)
chr1 (30-96)||(16254889-16254956)
chr1 (30-106)||(1270196-1270273)
chr1 (30-106)||(20808972-20809049)
chr1 (56-106)||(9098690-9098740)
chr1 (30-103)||(31032794-31032868)
chr1 (54-96)||(41646610-41646652)
chr1 (34-91)||(47550831-47550889)
chr1 (30-106)||(42480146-42480223)
chr1 (52-106)||(4194791-4194845)
[»] scaffold0002 (1 HSPs)
scaffold0002 (30-106)||(492691-492768)
[»] chr8 (10 HSPs)
chr8 (30-106)||(36473146-36473223)
chr8 (54-106)||(41322554-41322606)
chr8 (30-106)||(4851758-4851835)
chr8 (34-106)||(29314024-29314097)
chr8 (30-106)||(34392133-34392210)
chr8 (30-106)||(39112673-39112750)
chr8 (42-90)||(11643324-11643373)
chr8 (30-96)||(2001683-2001749)
chr8 (54-93)||(4794159-4794198)
chr8 (67-106)||(11653849-11653888)
[»] chr7 (5 HSPs)
chr7 (30-106)||(23992047-23992124)
chr7 (33-106)||(27425853-27425927)
chr7 (34-106)||(22326883-22326956)
chr7 (30-90)||(25686406-25686467)
chr7 (31-106)||(17611867-17611943)
[»] chr4 (11 HSPs)
chr4 (30-106)||(26179307-26179384)
chr4 (30-106)||(41633242-41633319)
chr4 (54-106)||(24683101-24683153)
chr4 (30-106)||(18375487-18375564)
chr4 (30-106)||(37674097-37674174)
chr4 (30-106)||(23348213-23348290)
chr4 (32-92)||(47839041-47839102)
chr4 (54-106)||(41878346-41878398)
chr4 (54-106)||(47281658-47281710)
chr4 (30-76)||(54358167-54358214)
chr4 (33-78)||(54021345-54021391)
[»] chr2 (15 HSPs)
chr2 (30-106)||(42263856-42263933)
chr2 (30-106)||(13686018-13686095)
chr2 (34-106)||(14941089-14941162)
chr2 (30-106)||(25414938-25415015)
chr2 (37-106)||(19898944-19899014)
chr2 (34-106)||(3810370-3810443)
chr2 (36-106)||(23454363-23454435)
chr2 (34-102)||(28429310-28429379)
chr2 (30-106)||(35323572-35323649)
chr2 (34-106)||(35676378-35676451)
chr2 (30-104)||(28716436-28716511)
chr2 (33-106)||(41464999-41465073)
chr2 (54-106)||(2752755-2752807)
chr2 (37-106)||(45093253-45093319)
chr2 (42-90)||(40126609-40126658)
[»] chr5 (13 HSPs)
chr5 (31-106)||(32891199-32891275)
chr5 (52-106)||(31644663-31644717)
chr5 (30-106)||(4391942-4392019)
chr5 (34-106)||(37094012-37094085)
chr5 (30-93)||(41326545-41326609)
chr5 (34-106)||(228048-228121)
chr5 (34-96)||(3456787-3456850)
chr5 (40-106)||(35672416-35672483)
chr5 (30-106)||(11739316-11739393)
chr5 (32-106)||(8692533-8692608)
chr5 (42-96)||(28434236-28434291)
chr5 (30-106)||(34286619-34286695)
chr5 (57-94)||(38614305-38614342)
[»] chr6 (4 HSPs)
chr6 (34-102)||(12607161-12607230)
chr6 (34-106)||(7646875-7646948)
chr6 (30-106)||(25935533-25935610)
chr6 (30-93)||(29487612-29487676)


Alignment Details
Target: scaffold0132 (Bit Score: 172; Significance: 3e-92; HSPs: 4)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 637 - 421
Alignment:
Q  30 cagccacacctccttaaattgtgtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgttannnnnnnatagatataggattgc 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||       ||||||||||||||||    
T  637 cagccacacctccttaaattgtgcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatataggattgc 538  T
Q  130 tataaaaaatatcaccatcacataatcacatagtaccaacacgccaatatagttcatttttgttcaataaaatttaaagaaacattagatgaatgaagtg 229  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  537 tataaaaaacatcaccatcacataatcacatagtaccaacacgccaatatagttcatttttgttcaataaaatttaaaggagcattagatgaatgaagtg 438  T
Q  230 aataccttaggtttcta 246  Q
    |||||||||||||||||    
T  437 aataccttaggtttcta 421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 8597 - 8381
Alignment:
Q  30 cagccacacctccttaaattgtgtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgttannnnnnnatagatataggattgc 129  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||       ||||||||||||||||    
T  8597 cagccacacctccttaaattgtgcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgttatttttttatagatataggattgc 8498  T
Q  130 tataaaaaatatcaccatcacataatcacatagtaccaacacgccaatatagttcatttttgttcaataaaatttaaagaaacattagatgaatgaagtg 229  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  8497 tataaaaaacatcaccatcacataatcacatagtaccaacacgccaatatagttcatttttgttcaataaaatttaaaggagcattagatgaatgaagtg 8398  T
Q  230 aataccttaggtttcta 246  Q
    |||||||||||||||||    
T  8397 aataccttaggtttcta 8381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 410 - 301
Alignment:
Q  289 aacagcaaaatttattaataactaaatccctatacaagacgaacaaagatatatatatggacaaaaactacaaaacgaagacgctgtatatatagactga 388  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||    
T  410 aacagcaaaatttattaataactaaatccctacacaagacgaacaaagatatat----ggacaaaaactacaaaacgaagacgccgtatatatagactga 315  T
Q  389 acacccaaacgaaa 402  Q
    ||||||||||||||    
T  314 acacccaaacgaaa 301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 289 - 402
Target Start/End: Complemental strand, 8370 - 8261
Alignment:
Q  289 aacagcaaaatttattaataactaaatccctatacaagacgaacaaagatatatatatggacaaaaactacaaaacgaagacgctgtatatatagactga 388  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||||||||||| |||||||||||||||    
T  8370 aacagcaaaatttattaataactaaatccctacacaagacgaacaaagatatat----ggacaaaaactacaaaacgaagacgccgtatatatagactga 8275  T
Q  389 acacccaaacgaaa 402  Q
    ||||||||||||||    
T  8274 acacccaaacgaaa 8261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 521861 - 521938
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  521861 cagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 521938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 31788403 - 31788330
Alignment:
Q  34 cacacctccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31788403 cacacctccttgaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 31788330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 1561352 - 1561429
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  1561352 cagccacacctccttgaattgtggcaaatagtgcattgtgattggttgctctttattcttgaagaattcttgatgtta 1561429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 50612975 - 50613048
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50612975 cacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 50613048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 34624573 - 34624640
Alignment:
Q  30 cagccacacctccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaatt 96  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34624573 cagccacacttcctcaaattgtggtaaatagtgcattgtgattggctgctctttattcttgaagaatt 34624640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 36517612 - 36517539
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  36517612 cacacctccttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgtta 36517539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 45166328 - 45166251
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||| ||||||| |||||||  |||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  45166328 cagccacgcctccttgaattgtggcaaatagtgcattgtgattggctgctctttattattgaagaattcttgatgtta 45166251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 38176486 - 38176560
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatg 103  Q
    ||||||||||||||| ||||| |  ||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  38176486 cagccacacctccttgaattgaggcaaatagtgcattgcgattggctgctctttattcttgaagaattcttgatg 38176560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 20912265 - 20912192
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||||| ||  |||||||||||||| |||| ||||||||||||||||||||||| |||||||||    
T  20912265 cacacctccttaaattatgacaaatagtgcattgttattgactgctctttattcttgaagaattcttgatgtta 20912192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 52546840 - 52546767
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||| || |||||||  ||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  52546840 cacacctcattgaattgtgacaaatagcacattgtgattggctgctctttattcttgaagaatttttgatgtta 52546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 23643080 - 23643153
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||||  ||||||||||||||||||| ||  | ||||||||||||||||| |||||||||    
T  23643080 cacacctccttgaattgtggcaaatagtgcattgtgattgactaatatttattcttgaagaattcttgatgtta 23643153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 43203318 - 43203273
Alignment:
Q  61 gcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||    
T  43203318 gcattgtgattggctgctctttatttttgaagaattcttgatgtta 43203273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Complemental strand, 39145328 - 39145280
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaattgttgat 102  Q
    |||||||||||||| |||||||||| ||||||||| ||||||| |||||    
T  39145328 aaatagtgcattgtaattggctgctttttattcttaaagaattcttgat 39145280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 18732970 - 18733013
Alignment:
Q  289 aacagcaaaatttattaataactaaatccctatacaagacgaac 332  Q
    |||||||||||||||||||||| || ||||| ||||||||||||    
T  18732970 aacagcaaaatttattaataaccaagtccctgtacaagacgaac 18733013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 9496603 - 9496567
Alignment:
Q  58 agtgcattgtgattggctgctctttattcttgaagaa 94  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  9496603 agtgaattgtgattggctactctttattcttgaagaa 9496567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 29095619 - 29095696
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29095619 cagccacacctccttgaattgtggcaaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 29095696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 34476001 - 34475924
Alignment:
Q  30 cagccacacctccttaaattgtgtaa-atagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| ||||| |  | ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34476001 cagccacacctccttgaattggggcagatagtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 34475924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 34808038 - 34807961
Alignment:
Q  30 cagccacacctccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||||||||| || |||||||| ||||||||||| |||||||||||| |||||||||| |||||||||    
T  34808038 cagccacacctccttaaattatgataaatagtacattgtgattgactgctctttatttttgaagaattcttgatgtta 34807961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 24135855 - 24135780
Alignment:
Q  30 cagccacacctccttaaattgtgtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  || | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  24135855 cagccacacctccttgaattgtggcaa-attgcattgtgattggctgctctttattcttgaagaattcttgatgtta 24135780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 16254956 - 16254889
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaatt 96  Q
    |||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||||||||    
T  16254956 cagccacacctccttaaattatggcaaatagtgcattgtgattggctgatctttattcttgaagaatt 16254889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 1270273 - 1270196
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| ||| |||||||  ||||||||||||| |||||| |||||||||||||||||||||| |||||||||    
T  1270273 cagccacaccttcttgaattgtggcaaatagtgcattgagattggttgctctttattcttgaagaattcttgatgtta 1270196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 20809049 - 20808972
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||| |||||| |||||||  ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  20809049 cagccacatctccttgaattgtggcaaataatgcattgtgattgactgctctttattcttgaagaattcttgatgtta 20808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 9098690 - 9098740
Alignment:
Q  56 atagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  9098690 atagtgcattgtgattggctgctctttattcttaaagaattcttgatgtta 9098740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 31032794 - 31032868
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatg 103  Q
    ||||||||||||||| || ||||  ||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  31032794 cagccacacctccttgaactgtggcaaatagtgcattgtgattgactgatctttattcttgaagaattcttgatg 31032868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 41646652 - 41646610
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaatt 96  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  41646652 aaatagtgcattgtgattgactgctctttattcttgaagaatt 41646610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 47550889 - 47550831
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaa 91  Q
    |||||||||||||||||||  |||||||||||||| ||| |||||||||||||||||||    
T  47550889 cacacctccttaaattgtggcaaatagtgcattgtaatttgctgctctttattcttgaa 47550831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 42480223 - 42480146
Alignment:
Q  30 cagccacacctccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||| || ||||||| |||||| | |||||| |||| ||||| ||||||||||||||||| |||||||||    
T  42480223 cagccacacctcattgaattgtggtaaataatacattgtaattgactgctatttattcttgaagaattcttgatgtta 42480146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 4194845 - 4194791
Alignment:
Q  52 gtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||  |||||||||| ||| ||||||||||||||||||| |||||||||    
T  4194845 gtaaatagtatattgtgattgactgttctttattcttgaagaattcttgatgtta 4194791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 492768 - 492691
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  492768 cagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 492691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 36473146 - 36473223
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||||| |||||||||    
T  36473146 cagccacacctccttaaattgtgtcaaatagtgtactgtgattgactgctctttattcttgaagaattcttgatgtta 36473223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 41322606 - 41322554
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  41322606 aaatagtgcattgtgattgactgctctttattcttgaagaattcttgatgtta 41322554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 4851835 - 4851758
Alignment:
Q  30 cagccacacctccttaaattgtgtaaa-tagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||| ||||||||||||| ||| ||||||||| |||||| ||||||||||||||| || |||| |||||||||    
T  4851835 cagccacacttccttaaattgtggaaaatagtgcattatgattgactgctctttattcttaaaaaattcttgatgtta 4851758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 29314097 - 29314024
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||||||||  ||||||||||||||||||| || |||||||||||| || |||| |||||||||    
T  29314097 cacacctccttaaattgtggcaaatagtgcattgtgattgacttctctttattcttaaacaattcttgatgtta 29314024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 34392210 - 34392133
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||||||||  ||||||| |||||||||||  ||||||||||||||||| |||| |||||||||    
T  34392210 cagccacaccttcttaaattgtggcaaatagtacattgtgattgagtgctctttattcttgaaaaattcttgatgtta 34392133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 39112750 - 39112673
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||| ||||||||| |||| ||  |||||||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  39112750 cagccgcacctccttgaattatggcaaatagtgcattgtgattggttgctctttatttttgaagaattcttgatgtta 39112673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 11643373 - 11643324
Alignment:
Q  42 cttaaattgtg-taaatagtgcattgtgattggctgctctttattcttga 90  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  11643373 cttaaattgtggtaaatagtgcattgtgattgactgctctttattcttga 11643324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 2001749 - 2001683
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaatt 96  Q
    |||||||||||||||||||||||  |||| ||| ||| |||||| |||||||||||||||||||||||    
T  2001749 cagccacacctccttaaattgtggcaaatcgtgtatt-tgattgactgctctttattcttgaagaatt 2001683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 4794198 - 4794159
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaaga 93  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  4794198 aaatagtgcattgtgattggctgctatttattcttgaaga 4794159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 11653849 - 11653888
Alignment:
Q  67 tgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  11653849 tgattgactgctctttattcttgaagaattcttgatgtta 11653888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 23992047 - 23992124
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  23992047 cagccacacctccttgaattgtggcaaatagtgcattgtgataggctgctctttattcttgaagaattcttgatgtta 23992124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 27425853 - 27425927
Alignment:
Q  33 ccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||| |||||| |||||||  ||||| ||||||||||||| ||| ||||||||||| ||||||| |||||||||    
T  27425853 ccacaactccttgaattgtggcaaataatgcattgtgattgactgttctttattctttaagaattcttgatgtta 27425927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 22326956 - 22326883
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||| | |||||||  ||||||| ||||||||||| | ||||||| ||||||||||||| |||||||||    
T  22326956 cacacctccctgaattgtggcaaatagtacattgtgattgacggctctttcttcttgaagaattcttgatgtta 22326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 25686467 - 25686406
Alignment:
Q  30 cagccacacctccttaaattgt-gtaaatagtgcattgtgattggctgctctttattcttga 90  Q
    |||||||||||||||||||||| ||||||||| |||| ||||||  || |||||||||||||    
T  25686467 cagccacacctccttaaattgtggtaaatagtacattatgattgattgttctttattcttga 25686406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 17611943 - 17611867
Alignment:
Q  31 agccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||| |||||| |||||||  ||||| | |||| ||||||| || ||||||||||||||||||| |||||||||    
T  17611943 agccacatctccttgaattgtggcaaataattcattatgattggttgttctttattcttgaagaattcttgatgtta 17611867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 26179307 - 26179384
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||    
T  26179307 cagccacacctccttgaattgtgttaaatagtgcactgtgattggctgctctttattcttgaagaattcttaatgtta 26179384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 41633319 - 41633242
Alignment:
Q  30 cagccacacctccttaaattgtgtaaa-tagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  || |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  41633319 cagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaagaattcttaatgtta 41633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 24683153 - 24683101
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  24683153 aaatagtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 24683101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 18375487 - 18375564
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  ||||||||||||||||||| | || |||||||||||||||||| |||||||||    
T  18375487 cagccacacctccttgaattgtggcaaatagtgcattgtgattgaccgcactttattcttgaagaattcttgatgtta 18375564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 37674097 - 37674174
Alignment:
Q  30 cagccacacctccttaaattgt-gtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||| || |||||| ||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||    
T  37674097 cagccacacctctttgaattgtagtaaatagtacattgtgattgactgctctttagtcttgaagaattcttgatgtta 37674174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 23348213 - 23348290
Alignment:
Q  30 cagccacacctccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||| || ||||||||| ||||||||||  || ||||||||||| ||||||| |||||||||    
T  23348213 cagccacacctccttgaattatggtaaatagtgtattgtgattgagtgttctttattcttaaagaattattgatgtta 23348290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 47839041 - 47839102
Alignment:
Q  32 gccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaag 92  Q
    |||||||||||||||||||||  ||||||| ||||||| ||| |||||||||||||||||||    
T  47839041 gccacacctccttaaattgtggcaaatagtacattgtggttgactgctctttattcttgaag 47839102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 41878398 - 41878346
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  41878398 aaatagtgcattgtgattggctgatctttattcatgaagaattcatgatgtta 41878346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 47281658 - 47281710
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||||||| |  | ||||||||||||||||||| |||||||||    
T  47281658 aaatagtgcattgtgatttgtcgttctttattcttgaagaattcttgatgtta 47281710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 54358214 - 54358167
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctg 76  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||    
T  54358214 cagccacacccccttaaattgtggcaaatagtgcattgtgattggctg 54358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 54021345 - 54021391
Alignment:
Q  33 ccacacctccttaaattgtgtaa-atagtgcattgtgattggctgct 78  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||    
T  54021345 ccacacctccttaaattgtggcacatagtgcattgtgattggctgct 54021391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 42263933 - 42263856
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  42263933 cagccacacctccttgaattgtgacaaattgtgcattgtgattggctgctctttattcttgaagaattcttgatgtta 42263856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 13686095 - 13686018
Alignment:
Q  30 cagccacacctccttaaattgtgtaaa-tagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  13686095 cagccacacctccttgaattgtggcaagtagtgcattgtgattggctgctctttattcttgaaaaattcttgatgtta 13686018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 14941089 - 14941162
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||| || |||||||  ||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  14941089 cacacctctttgaattgtggcaaatagtgcattgtgattgactgctctttattcttgaagaattattgatgtta 14941162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 25415015 - 25414938
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||| |||||||| |||||||  ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  25415015 cagccatacctccttgaattgtggcaaatagtgcattgtgattgactgttctttattcttgaagaattcttgatgtta 25414938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 19899014 - 19898944
Alignment:
Q  37 acctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||| || ||||||    
T  19899014 acctccttgaattgtgacaaataatgcattgtgattggctgctctttattcttgaagaattcttaatgtta 19898944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 3810370 - 3810443
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||||  |||||||||||||| ||||||| |||||||||||||||||||| || ||||||    
T  3810370 cacacctccttgaattgtggcaaatagtgcattgtaattggctactctttattcttgaagaattattaatgtta 3810443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 106
Target Start/End: Original strand, 23454363 - 23454435
Alignment:
Q  36 cacctccttaaattgtgtaaa--tagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||| |||||||| ||  |||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  23454363 cacctccttgaattgtgtcaaattagtgcattgtgattgactgctctttattcttgaagaattttttatgtta 23454435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 28429379 - 28429310
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgat 102  Q
    |||||||||||||||| ||  ||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  28429379 cacacctccttaaattatggcaaataatgcattgtgtttggctgctctttattcttgaagaattcttgat 28429310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 35323572 - 35323649
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||| || |||||||  |||||||| |||||||||| ||| ||||||||||||||||||| |||||||||    
T  35323572 cagccacacctcattgaattgtggcaaatagtgtattgtgattgactgttctttattcttgaagaatttttgatgtta 35323649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 35676378 - 35676451
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||||  ||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||    
T  35676378 cacacctccttgaattgtggcaaatagtgcattgtggttgactgctctttattcttaaagaattcttgatgtta 35676451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 28716436 - 28716511
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgt 104  Q
    |||||||||||| || |||||||  ||||||||||||||||| |||| || ||||||||||||||||| |||||||    
T  28716436 cagccacacctctttgaattgtggcaaatagtgcattgtgatcggctactatttattcttgaagaattcttgatgt 28716511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 41464999 - 41465073
Alignment:
Q  33 ccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||| ||||| |  |||||||||||||||||  ||||| |||||||||||||||||| |||||||||    
T  41464999 ccacacctccttgaattgcggcaaatagtgcattgtgatccgctgcactttattcttgaagaattcttgatgtta 41465073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 2752755 - 2752807
Alignment:
Q  54 aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||||||||| ||| ||||||||||||| || ||||||    
T  2752755 aaatagtgcattgtgattggctgctattttttcttgaagaattcttaatgtta 2752807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 45093253 - 45093319
Alignment:
Q  37 acctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||| |||||||  |||||||||||||||||||    |||||||||||||||||||| |||||||||    
T  45093253 acctccttgaattgtggcaaatagtgcattgtgattg----ctctttattcttgaagaattattgatgtta 45093319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 40126609 - 40126658
Alignment:
Q  42 cttaaattgtg-taaatagtgcattgtgattggctgctctttattcttga 90  Q
    ||||||||||| ||||||||||||| ||| || |||||||||||||||||    
T  40126609 cttaaattgtgataaatagtgcattatgaatgactgctctttattcttga 40126658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 32891275 - 32891199
Alignment:
Q  31 agccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  32891275 agccacacctccttgaattgtggcaaatagtgcattgtgattggctgctttttattcttgaagaattcttgatgtta 32891199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 31644717 - 31644663
Alignment:
Q  52 gtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31644717 gtaaatagtgcattgtgattggctgctctttattcttgaagaattattgatgtta 31644663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 4391942 - 4392019
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||| |||||| |||||||  ||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  4391942 cagccacagctccttgaattgtggcaaacagtgcattgtaattggctgctctttattcttgaagaattcttgatgtta 4392019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 37094012 - 37094085
Alignment:
Q  34 cacacctccttaaattgt-gtaaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| |||||| | ||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  37094012 cacacctccttgaattgttgcaaatagtacaatgtgattgactgctctttattcttgaagaattgttgatgtta 37094085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 41326545 - 41326609
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaaga 93  Q
    ||||||||||||||| |||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  41326545 cagccacacctccttgaattgtgtcaaatagcacattgtgattggctgctctttattcttgaaga 41326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 228121 - 228048
Alignment:
Q  34 cacacctccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| ||||||| ||||||||||||||||||||  || |||||||||||||| |||| |||||||||    
T  228121 cacacctccttgaattgtggtaaatagtgcattgtgattgattgttctttattcttgaaaaattcttgatgtta 228048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 3456850 - 3456787
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaatt 96  Q
    ||||||||||| |||||||  |||||||||||||||| || |||||||||||||||||||||||    
T  3456850 cacacctccttgaattgtggcaaatagtgcattgtgagtgactgctctttattcttgaagaatt 3456787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 35672416 - 35672483
Alignment:
Q  40 tccttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||||||||| |||| || ||||||    
T  35672416 tccttaaattgcgataaatagtgcattgtgattgactgctctttattcttgaaaaattcttaatgtta 35672483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 11739316 - 11739393
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||||||| |||||||  ||| |||||||| |||||  ||||| ||||||||||||||||| |||||||||    
T  11739316 cagccacacctccttgaattgtggcaaacagtgcattatgattacctgctttttattcttgaagaattcttgatgtta 11739393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 8692608 - 8692533
Alignment:
Q  32 gccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||| ||||| |||||||  ||||||| |||| ||||||| |||| ||||||||||||||||| |||||||||    
T  8692608 gccacacttccttgaattgtggcaaatagtacattatgattggatgctatttattcttgaagaattcttgatgtta 8692533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 28434291 - 28434236
Alignment:
Q  42 cttaaattgtg-taaatagtgcattgtgattggctgctctttattcttgaagaatt 96  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||    
T  28434291 cttaaattgtggtaaatagtgcattgtaattggctgctctttatttttaaagaatt 28434236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 34286695 - 34286619
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||||||||| | | |||||||  ||||||||||| ||||||||||||| |||||||||||| |||| |||||||||    
T  34286695 cagccacaccttcattaattgtggcaaatagtgcatcgtgattggctgct-tttattcttgaataattattgatgtta 34286619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 38614305 - 38614342
Alignment:
Q  57 tagtgcattgtgattggctgctctttattcttgaagaa 94  Q
    |||||||||||||||||  |||||||||||||||||||    
T  38614305 tagtgcattgtgattgggcgctctttattcttgaagaa 38614342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 12607161 - 12607230
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgat 102  Q
    |||||||||||||||||||  |||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  12607161 cacacctccttaaattgtggcaaatagtgcactgtgattgactgctctttattcttgaagaattcttgat 12607230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 7646875 - 7646948
Alignment:
Q  34 cacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    ||||| ||||| |||||||  |||||||||||||||||||||||||||||||| || ||||||| |||||||||    
T  7646875 cacacatccttgaattgtggcaaatagtgcattgtgattggctgctctttatttttaaagaattcttgatgtta 7646948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 25935610 - 25935533
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaagaattgttgatgtta 106  Q
    |||||||||||||||||||||||  ||||||| |||| ||||| | ||||||||||||||||| |||| || ||||||    
T  25935610 cagccacacctccttaaattgtgacaaatagtacattatgattagatgctctttattcttgaataattcttaatgtta 25935533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 29487612 - 29487676
Alignment:
Q  30 cagccacacctccttaaattgtgt-aaatagtgcattgtgattggctgctctttattcttgaaga 93  Q
    |||||||||||| || |||||||  |||||||||| |||||||| || |||||||||||| ||||    
T  29487612 cagccacacctcatttaattgtggcaaatagtgcaatgtgattgactactctttattctttaaga 29487676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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