View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7913_low_6 (Length: 415)

Name: NF7913_low_6
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7913_low_6
NF7913_low_6
[»] chr6 (13 HSPs)
chr6 (19-395)||(5253715-5254082)
chr6 (18-336)||(5065245-5065563)
chr6 (18-298)||(5126460-5126743)
chr6 (22-317)||(5177924-5178210)
chr6 (22-134)||(5279749-5279861)
chr6 (22-134)||(5688901-5689013)
chr6 (245-334)||(5126352-5126441)
chr6 (18-134)||(5346210-5346326)
chr6 (22-132)||(5398231-5398341)
chr6 (18-134)||(5242510-5242626)
chr6 (266-317)||(5688716-5688767)
chr6 (52-134)||(5072680-5072762)
chr6 (258-306)||(5279907-5279955)
[»] chr3 (4 HSPs)
chr3 (18-132)||(47985393-47985507)
chr3 (18-132)||(48003967-48004081)
chr3 (18-132)||(47994680-47994794)
chr3 (18-132)||(48013252-48013366)
[»] chr7 (1 HSPs)
chr7 (18-134)||(36212919-36213035)
[»] chr4 (3 HSPs)
chr4 (19-87)||(25569022-25569090)
chr4 (18-149)||(4132601-4132729)
chr4 (18-134)||(4337083-4337199)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 5253715 - 5254082
Alignment:
Q  19 gaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagttt 118  Q
    ||||||||||| |||||||||| ||| ||| |||||||||| ||||||||| |||| | |||||||||||||   || |||||| ||||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  119 atctcatatatgatgagccgattgctgaaaaggcggaggagtgtcatggacaagataagaatgttattgttagtagaggtgatgaaaatgaatgttttgt 218  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  5253815 atctcatatatgacgagcccattgctgaaaaggcggaggagtgtcatggacaagatatgaatgttattgttagtagtggttatgaaaatgaatgttttgt 5253914  T
Q  219 tagaagtgtctcttctaatgtacaatataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggcg 318  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||          ||||||||| ||||||||    
T  5253915 tagaagtgtctcttctaatgcacaatataagaatcaaccaattgtttgtagtgatgaagaaaatgaatgctt---------ggtctctcctaaagtggcg 5254005  T
Q  319 cccatggatgacttaacagataatagaaggacggacattctcagaaggcttctgaaggattgggttgtggggtaagt 395  Q
    ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5254006 cccttggatgacttaacagataacagaaggacggacattctcagaaggcttctgaaggattgggtcgtggggtaagt 5254082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 5065563 - 5065245
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    ||||||||||||||||||| ||||||| ||| |||||||||| ||||||||  |||| | ||||||||||||||  ||  ||||| ||||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  118 tatctcatatatgatgagccgattgctgaaaaggcggaggagtgtcatggacaagataagaatgttattgttagtagaggtgatgaaaatgaatgttttg 217  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||     
T  5065463 tatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatgcttt- 5065365  T
Q  218 ttagaagtg-tctcttctaatgtacaatataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtgg 316  Q
     |||  | | |||||||| ||| |||| |||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5065364 ctaggcgagatctcttctcatgcacaacataagaacgaatcaattgtttgtagtggtgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtgg 5065265  T
Q  317 cgcccatggatgacttaaca 336  Q
      ||  ||||||||||||||    
T  5065264 ttcctgtggatgacttaaca 5065245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 5126743 - 5126460
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||||||||| |||||||| ||||||| ||  || |||| |||||||| ||| |||| | ||||||| ||||||  || |||||| ||| |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  118 tatctcatatatgatgagccgattgctgaaaaggcggaggagtgtcatggac---aagataagaatgttattgttagtagaggtgatgaaaatgaatgtt 214  Q
    ||||||||||||||||| || |||| |||||    | || | ||||||| ||    | |||||||||||| |||| |||| |||||| ||| |||| | |    
T  5126643 tatctcatatatgatgaaccaattggtgaaactatgaagcaatgtcatgcacggacatataagaatgttaatgtttgtagtggtgataaaactgaaagct 5126544  T
Q  215 ttgttagaagtgtctcttctaatgtacaatataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaa 298  Q
    |||  |||   ||||||||| ||| | || | ||||||||| | |||||| |||||||||||||||||||| ||||||||||||    
T  5126543 ttgaaagagaggtctcttctcatgcagaagaaaagaatcaacctattgttagtagtgatgaagaaaatgaaggctttgtcagaa 5126460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 317
Target Start/End: Original strand, 5177924 - 5178210
Alignment:
Q  22 gaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatc 121  Q
    ||||| ||||||||| ||||||| ||  ||||| | ||||||||||||||||| | ||||||||||||||  || |||||| |||  |||||||||||||    
T  5177924 gagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatc 5178023  T
Q  122 tcatatatgatgagccgattgctgaaaaggcggaggagtgtcatggacaagataagaatgttattgttagtagaggtgatgaaaatgaatgttttgttag 221  Q
    || |||||||||| || ||||  |||||   |||| | || || | |||||  |||||    |||||  |||| ||||||||| ||||||| ||||| ||    
T  5178024 tcgtatatgatgaaccaattggagaaaaaatggagcaatgccaagaacaag--aagaa----attgtgtgtagtggtgatgaagatgaatgctttgtcag 5178117  T
Q  222 aagtgtctcttctaatgtacaatataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 317  Q
    |   ||||||||||||| |||| || | |||   |  |||||| |||||| ||| |||||||||||  |||||||||| |||||||||||||||||    
T  5178118 agaagtctcttctaatgcacaagattacaat---gtcattgttagtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5178210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 5279749 - 5279861
Alignment:
Q  22 gaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatc 121  Q
    ||||| ||||||||| ||||||| ||  ||||| | ||||||||||||||||| | ||||||||||||||  || |||||| |||  |||||||||||||    
T  5279749 gagggtcagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatc 5279848  T
Q  122 tcatatatgatga 134  Q
    || ||||||||||    
T  5279849 tcgtatatgatga 5279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 5689013 - 5688901
Alignment:
Q  22 gaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatc 121  Q
    ||||| ||||||||| ||||||| ||  ||||| | |||||||||||||||||  |||||||||||||||  || |||||| |||  |||||||||||||    
T  5689013 gagggacagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatc 5688914  T
Q  122 tcatatatgatga 134  Q
    || ||||||||||    
T  5688913 tcgtatatgatga 5688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 5126441 - 5126352
Alignment:
Q  245 ataagaatcaagcaattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggcgcccatggatgacttaa 334  Q
    |||||||| || ||||||||||||||| ||||||||| ||| |||||||||| || || |||||||||||||| ||||| ||||| ||||    
T  5126441 ataagaatgaaccaattgtttgtagtgctgaagaaaaggaaggctttgtcaggaaggtatctcctcaagtggctcccattgatgatttaa 5126352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 5346210 - 5346326
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    ||||||||| ||||||||  ||||||| ||  ||||||| ||||||||||||||||| | |||| ||||||| |  || |||||| ||| |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  118 tatctcatatatgatga 134  Q
    |||||||||||||||||    
T  5346310 tatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 5398231 - 5398341
Alignment:
Q  22 gaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatc 121  Q
    |||||||| || ||| ||||||| ||  ||||||| |||||||| ||||||||   |||||| ||||| || || |||||| ||| ||||||||||||||    
T  5398231 gaggggcaaagggtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatc 5398330  T
Q  122 tcatatatgat 132  Q
    |  ||||||||    
T  5398331 ttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 5242626 - 5242510
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||| |||||| ||||||| ||| ||| ||  ||||||| |||||||||||||| ||   |||||||||||||   || |||||| ||| ||||  ||||    
T  5242626 tgagaaggggctgagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtt 5242527  T
Q  118 tatctcatatatgatga 134  Q
    |||||| ||||||||||    
T  5242526 tatctcgtatatgatga 5242510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 317
Target Start/End: Complemental strand, 5688767 - 5688716
Alignment:
Q  266 gtagtgatgaagaaaatgaatgctttgtcagaaaagtctctcctcaagtggc 317  Q
    |||||| ||| |||||||||||  |||||||||| |||||||||||||||||    
T  5688767 gtagtggtgatgaaaatgaatgtgttgtcagaaatgtctctcctcaagtggc 5688716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 5072762 - 5072680
Alignment:
Q  52 cctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtttatctcatatatgatga 134  Q
    ||||| ||| ||||||||||||| | |||| |||||||||| || |||||| | | ||||| | ||||||||||||| |||||    
T  5072762 cctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatatacgatga 5072680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 5279907 - 5279955
Alignment:
Q  258 aattgtttgtagtgatgaagaaaatgaatgctttgtcagaaaagtctct 306  Q
    |||||| ||||||| ||| ||| ||||||||||||||||| ||||||||    
T  5279907 aattgtgtgtagtggtgatgaagatgaatgctttgtcagagaagtctct 5279955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 47985507 - 47985393
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||||||||| |||||||| ||||||| ||  |||| || |||||||||||||| || | |||||||||||| |  || |||||| |||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  118 tatctcatatatgat 132  Q
    |||||  ||||||||    
T  47985407 tatcttgtatatgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 48004081 - 48003967
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||||||||| |||||||| ||||||| ||  |||| || |||||||||||||| || | |||||||||||| |  || |||||| |||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  118 tatctcatatatgat 132  Q
    |||||  ||||||||    
T  48003981 tatcttgtatatgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 47994794 - 47994680
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||||||||| |||||||| ||||||| ||  || | || |||||||||||||| || | |||||||||||| |  || |||||| |||||| | |||||    
T  47994794 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47994695  T
Q  118 tatctcatatatgat 132  Q
    |||||  ||||||||    
T  47994694 tatcttgtatatgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 48013366 - 48013252
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||||||||| |||||||| ||||||| ||  || | || |||||||||||||| || | |||||||||||| |  || |||||| |||||| | |||||    
T  48013366 tgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48013267  T
Q  118 tatctcatatatgat 132  Q
    |||||  ||||||||    
T  48013266 tatcttgtatatgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 36213035 - 36212919
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    |||||||||||||||| || ||||||| ||  |||||||  | ||| |||||||||| | ||||||||||||| | || |||||| ||| |||| |  ||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  118 tatctcatatatgatga 134  Q
    |||||||| ||||||||    
T  36212935 tatctcatttatgatga 36212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 25569022 - 25569090
Alignment:
Q  19 gaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgag 87  Q
    ||||||||||| | |||| ||||||| ||  |||||||||||||||||||||||||   ||||||||||    
T  25569022 gaggaggggcatatagtagtatcaagtatagaacctggaaacaaagtggaggttgtttttgtttttgag 25569090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 4132729 - 4132601
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    ||||||| ||||||||||| ||||||  ||  |||||||  ||||||| ||| ||||   |||||||| ||||   || ||||||  || |||| |||||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgt---tgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  118 tatctcatatatgatgagccgattgctgaaaa 149  Q
    ||||||||||||||||| || |||| ||||||    
T  4132632 tatctcatatatgatgaaccaattggtgaaaa 4132601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 4337083 - 4337199
Alignment:
Q  18 tgaggaggggcagagagtattatcaagcattcaacctggaaacaaagtggaggttgtagctgtttttgagaacgactttattgtggagaggacaacagtt 117  Q
    ||||||| ||||||||||  ||||||  ||  |||||||  | ||||| ||| |||| | |||||||| ||||   | |||||||  |||||||||||||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  118 tatctcatatatgatga 134  Q
    |||||||||||| ||||    
T  4337183 tatctcatatatcatga 4337199  T

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