View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7913_low_7 (Length: 396)
Name: NF7913_low_7
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 28787035 - 28787418
Alignment:
| Q |
1 |
aattttcaatttgataaaacaactcatgtacatttgatattgcttacagttccctcaaattcggaaggttccccaaagtggctgggagtacacccgtcaa |
100 |
Q |
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| T |
28787035 |
aattttcaatttgataaaacaactcatgtacatttgagattgcttacagttccctcaaatttggaaggttccccaaagtggctgggagtacacccgtcaa |
28787134 |
T |
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| Q |
101 |
ctgattgttctcaagatgactgaaaggnnnnnnnnggttttagttaactcaaaactaaacaaatatgaataagggatgaatttctcagcaattacatgat |
200 |
Q |
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| T |
28787135 |
ctgattgttctcaagatgactgaaaggaaaaaaaaggttttagttaactcaaaactaaacaaatatgaataagggatgaatttctcagcaattacatgat |
28787234 |
T |
|
| Q |
201 |
ctttaagtccatgcatccagtgaaatctggtattgggcctgtcagcatatttctatcaagccatctgaaaccataacacaagtttgatatataaaacatg |
300 |
Q |
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| T |
28787235 |
ctttaagtccatgcatccagtgaaatctggtattgggcctgtcagcatatttccatcaagccatctgaaaccataacacaagtttgatatataaaacatg |
28787334 |
T |
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| Q |
301 |
agacatcagaagtttcactgaagccaaataaaaaagtaatataaacttacagttcaaccaaactggtcaatctagtgatgtcca |
384 |
Q |
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| T |
28787335 |
agacatcagaagtttcactgaagccaaataaaaaagtaatataaacttacagttcaaccaaaccggtcaatctagtgatgtcca |
28787418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 12103561 - 12103441
Alignment:
| Q |
2 |
attttcaatttgataaaacaactcatgtacatttgatattgcttacagttccctcaaattcggaaggttccccaaagtggctgggagtacacccgtcaac |
101 |
Q |
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|||| |||||||||||| ||| ||||||||| |||| || |||||| |||| ||||||||||||||||||| | ||| |||||||| ||||| |||||| |
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| T |
12103561 |
atttacaatttgataaagcaattcatgtacaattgagatatcttacaattccttcaaattcggaaggttcccgagagtcgctgggagcacacctgtcaac |
12103462 |
T |
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| Q |
102 |
tgattgttctcaagatgactg |
122 |
Q |
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||||||||||||||||||||| |
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| T |
12103461 |
tgattgttctcaagatgactg |
12103441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 40532435 - 40532353
Alignment:
| Q |
185 |
tcagcaattacatgatctttaagtccatgcatccagtgaaatctggtattgggcctgtcagcatatttctatcaagccatctg |
267 |
Q |
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| T |
40532435 |
tcagaaattacatgatctttaagtccatgcacccggtaaaatctggtattgggccggtcaacatatttccatcaagccatctg |
40532353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 40532578 - 40532499
Alignment:
| Q |
43 |
cttacagttccctcaaattcggaaggttccccaaagtggctgggagtacacccgtcaactgattgttctcaagatgactg |
122 |
Q |
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||||||||||||||||| ||||||||||| |||||| |||||| || ||||| | |||||||| || |||||||||||| |
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| T |
40532578 |
cttacagttccctcaaactcggaaggttcgccaaagaggctggtagcacaccgttgaactgattattttcaagatgactg |
40532499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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