View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7913_low_8 (Length: 388)

Name: NF7913_low_8
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7913_low_8
NF7913_low_8
[»] chr4 (3 HSPs)
chr4 (166-249)||(23964794-23964877)
chr4 (53-119)||(23964729-23964795)
chr4 (317-371)||(23964945-23964999)


Alignment Details
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 23964794 - 23964877
Alignment:
Q  166 ctgagagaagtcgagattagtgaaaggttaacctcatgtttagttttatgagagtcttacctatgttactttaaacgtcgcgtc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23964794 ctgagagaagtcgagattagtgaaaggttaacctcatgtttagttttatgagagtcttacctatgttactttaaacgtcgcgtc 23964877  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 23964729 - 23964795
Alignment:
Q  53 tcggtaaccactggaagccagtcgtgaaccaactgggaggcataggaggtccgaccaaaaatcaact 119  Q
    ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  23964729 tcggtaaccactggaagtcagttgtgaaccaacttggaggcataggaggtccgaccaaaaatcaact 23964795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 23964945 - 23964999
Alignment:
Q  317 gcagatatataatcggtaattatatagtcttagaggcttattaaacatggtatgt 371  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23964945 gcagatatataatcggttattatatagtcttagaggcttattaaacatggtatgt 23964999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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