View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7913_low_9 (Length: 340)
Name: NF7913_low_9
Description: NF7913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7913_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 33485711 - 33485463
Alignment:
| Q |
18 |
caaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtctgaaaacctacttgttgtggtggagatattgaaaatgcatttg |
117 |
Q |
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| T |
33485711 |
caaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtttgaaaacctacttgttgtggtggagatattgaaaatgcatttg |
33485612 |
T |
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| Q |
118 |
aaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgattcatagggatgccactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33485611 |
aaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgattcatagggatgccactg |
33485512 |
T |
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| Q |
218 |
tgagttgatcacagatgactcactccctaatggggatacagatttgagc |
266 |
Q |
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| T |
33485511 |
tgagttgatcacagatgactcactcccaagtggggatacagatttgagc |
33485463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 33498922 - 33498674
Alignment:
| Q |
18 |
caaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtctgaaaacctacttgttgtggtggagatattgaaaatgcatttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33498922 |
caaaattgtgcttcaccaccacatatgttcaacacaacattttgagaagaccatgtttgaaaacctacttgttgtggtggagatattgaaaatgcatttg |
33498823 |
T |
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| Q |
118 |
aaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgattcatagggatgccactg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33498822 |
aaggatttgaagttacaattgcattagacaagttattattataacttgaggatccttgatcagctaagaatgcttcccttgattcatagggatgccactg |
33498723 |
T |
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| Q |
218 |
tgagttgatcacagatgactcactccctaatggggatacagatttgagc |
266 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
33498722 |
tgagttgatcacagatgactcactcccaagtggggatacagatttgagc |
33498674 |
T |
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