View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7914_high_4 (Length: 213)

Name: NF7914_high_4
Description: NF7914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7914_high_4
NF7914_high_4
[»] chr1 (4 HSPs)
chr1 (1-193)||(49399565-49399757)
chr1 (1-92)||(49400245-49400336)
chr1 (1-83)||(27890587-27890669)
chr1 (5-81)||(27891256-27891332)
[»] chr4 (9 HSPs)
chr4 (1-193)||(52238170-52238359)
chr4 (8-159)||(48957348-48957498)
chr4 (22-148)||(53327496-53327620)
chr4 (1-84)||(52237654-52237737)
chr4 (14-115)||(53320656-53320760)
chr4 (1-83)||(55633573-55633655)
chr4 (33-110)||(50348329-50348406)
chr4 (13-46)||(48956668-48956701)
chr4 (6-46)||(5469968-5470008)
[»] chr7 (7 HSPs)
chr7 (1-193)||(32249364-32249552)
chr7 (8-140)||(32492585-32492717)
chr7 (5-84)||(45431082-45431161)
chr7 (1-84)||(45431780-45431863)
chr7 (1-66)||(22492486-22492551)
chr7 (4-46)||(23752803-23752845)
chr7 (6-46)||(48204977-48205017)
[»] chr3 (14 HSPs)
chr3 (5-190)||(23513711-23513894)
chr3 (1-92)||(44321516-44321606)
chr3 (14-118)||(54706952-54707056)
chr3 (1-84)||(23514452-23514535)
chr3 (1-83)||(16436543-16436625)
chr3 (98-193)||(44320867-44320959)
chr3 (6-46)||(8922908-8922948)
chr3 (6-46)||(8923631-8923671)
chr3 (6-46)||(41325846-41325886)
chr3 (6-46)||(50107592-50107632)
chr3 (5-46)||(10991087-10991128)
chr3 (6-46)||(1772891-1772931)
chr3 (6-46)||(34329132-34329172)
chr3 (6-46)||(41326544-41326584)
[»] chr2 (6 HSPs)
chr2 (4-92)||(33361069-33361157)
chr2 (4-92)||(20267187-20267275)
chr2 (4-92)||(20268948-20269036)
chr2 (20-140)||(41992711-41992832)
chr2 (14-81)||(41993318-41993385)
chr2 (6-46)||(41282960-41283000)
[»] chr8 (4 HSPs)
chr8 (14-115)||(17625666-17625766)
chr8 (5-83)||(17626316-17626394)
chr8 (8-114)||(3565853-3565959)
chr8 (8-46)||(38443060-38443098)
[»] chr5 (2 HSPs)
chr5 (21-115)||(128700-128794)
chr5 (5-83)||(129322-129400)
[»] scaffold0178 (1 HSPs)
scaffold0178 (6-46)||(18505-18545)
[»] chr6 (1 HSPs)
chr6 (6-46)||(3295801-3295841)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 49399565 - 49399757
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataa 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49399565 ttgcctttgctcaatttaccccatttaccttgatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataa 49399664  T
Q  101 aacaaaatccctagcctactactgttcaccttctccttcacgtccccttcccttcaccacctgtaaccagcctcttgtcgccgcccaccggta 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  49399665 aacaaaatccctagcctactactgttcaccttctccttcacgtccccttcccttcaccacctgtaaccagcctcttgttgccgcccaccggta 49399757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 49400336 - 49400245
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagata 92  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||    
T  49400336 ttgcctttgctcaatttatcccatttaccttcatgcatgtgtgacacatgttaaaagaatatccaacggttgaaattaaaaaaggaaagata 49400245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27890587 - 27890669
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaag 83  Q
    |||||||||||||||||| || ||||||| |||||||||||||||| |||  |||| | |||| || ||||||||||||||||    
T  27890587 ttgcctttgctcaatttatcctatttaccatcatggatgtgtgacatgtggcaaaatagtatcaaacggttgaaattaaaaag 27890669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 27891332 - 27891256
Alignment:
Q  5 ctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaa 81  Q
    |||| ||||||||| ||||||||||  ||||||||| ||||| |||  |||| | ||||||| | ||||||||||||    
T  27891332 ctttactcaatttatcccatttaccaacatggatgtctgacatgtggcaaaatagtatccaacgattgaaattaaaa 27891256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 52238359 - 52238170
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52238359 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagacaggtaataa 52238260  T
Q  101 aacaaaatccctagcctactactgttcaccttctccttcacgtccccttcccttcaccacctgtaaccagcctcttgtcgccgcccaccggta 193  Q
    ||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52238259 aacaaaatccctagcc---tactgttcaccttctccttcacgtccccttcccctcaccacctgtaaccagcctcttgtcgccgcccaccggta 52238170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 48957498 - 48957348
Alignment:
Q  8 tgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaa 107  Q
    ||||| ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48957498 tgctccatttaacccatttaccttcacggatgtgcgacatgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaa 48957399  T
Q  108 tccctagcctactactgttcaccttctccttcacgtccccttcccttcacca 159  Q
     ||||||| || |||||||||| |||||||||||||||||||||| ||||||    
T  48957398 cccctagctta-tactgttcactttctccttcacgtccccttcccctcacca 48957348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 22 - 148
Target Start/End: Original strand, 53327496 - 53327620
Alignment:
Q  22 catttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaatccctagcctacta 121  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||    
T  53327496 catttaccttcacggatgtgtgacatttgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaa-ccctagctta-ta 53327593  T
Q  122 ctgttcaccttctccttcacgtcccct 148  Q
     ||||||| ||||||||||||||||||    
T  53327594 ttgttcactttctccttcacgtcccct 53327620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 52237654 - 52237737
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagg 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||    
T  52237654 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacatgttaaaagaatatccaacagttgaaattaaaaagg 52237737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 53320760 - 53320656
Alignment:
Q  14 atttaccccatttaccttcatggatgtgtgacacgtgttaaaagaata---tccaatggttgaaattaaaaagggaaagataggtaataaaacaaaatcc 110  Q
    ||||||| |||||||||||||||||||| ||||||||| |||| ||||   | ||||||||||||||||||||||| | || ||||||||||||||||||    
T  53320760 atttacctcatttaccttcatggatgtgcgacacgtgtaaaaaaaataatattcaatggttgaaattaaaaagggacaaatcggtaataaaacaaaatcc 53320661  T
Q  111 ctagc 115  Q
    |||||    
T  53320660 ctagc 53320656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55633573 - 55633655
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaag 83  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  ||  |||| | |||| || ||||||||||||||||    
T  55633573 ttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatagtatcaaacggttgaaattaaaaag 55633655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 50348329 - 50348406
Alignment:
Q  33 atggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaatcc 110  Q
    |||||||||||||| |||  |||| |||||||||||||| |||||||||||| ||| ||| || ||||||||||||||    
T  50348329 atggatgtgtgacatgtggcaaaataatatccaatggttaaaattaaaaaggtaaatataagttataaaacaaaatcc 50348406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 48956668 - 48956701
Alignment:
Q  13 aatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||||||||||| ||||||||||||||||||    
T  48956668 aatttaccccatttatcttcatggatgtgtgaca 48956701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 5470008 - 5469968
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||||||||| |||||||||| | ||||||||||||||    
T  5470008 tttgctcaatttatcccatttaccattatggatgtgtgaca 5469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 32249364 - 32249552
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataa 100  Q
    ||||||||| |||||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32249364 ttgcctttgttcaatttaccccatttcctttcatagatgtgtgacacttgttaaaagaatatccaatggttgaaattaaaaaggtaaagataggtaataa 32249463  T
Q  101 aacaaaatccctagcctactactgttcaccttctccttcacgtccccttcccttcaccacctgtaaccagcctcttgtcgccgcccaccggta 193  Q
    |||||||||||||||   ||| |||||| ||||||||||||||||||||||||||||| ||  |||||| | ||||| |||||||||||||||    
T  32249464 aacaaaatccctagc---ctagtgttca-cttctccttcacgtccccttcccttcaccgcccataaccaacatcttgccgccgcccaccggta 32249552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 32492585 - 32492717
Alignment:
Q  8 tgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaa 107  Q
    ||||| |||||||||||| ||||| |||||||||||||| |||  |||| ||||||||| ||||||| ||||||||| ||| ||| ||||||||||||||    
T  32492585 tgctccatttaccccattgacctttatggatgtgtgacatgtggcaaaataatatccaacggttgaatttaaaaaggaaaaaataagtaataaaacaaaa 32492684  T
Q  108 tccctagcctactactgttcaccttctccttca 140  Q
    |||||||||||  ||||||||| ||||||||||    
T  32492685 tccctagcctagcactgttcactttctccttca 32492717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 45431082 - 45431161
Alignment:
Q  5 ctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagg 84  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  45431082 ctttgctcaatttatcccatttaccatcatggatgtgtgacacgtgttaaaataatatccaacggttgaaataaaaaagg 45431161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 45431863 - 45431780
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagg 84  Q
    |||||||||||| ||||| | |||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||| |||||||    
T  45431863 ttgcctttgctccatttaactcatttaccatcatggatgtgtgatacgtgttaaaataatatccaatggtcgaaataaaaaagg 45431780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 22492551 - 22492486
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaa 66  Q
    |||||||||||| ||||| |||||||||| |||||||||||||||||||| ||||| |||||||||    
T  22492551 ttgcctttgctccatttatcccatttaccatcatggatgtgtgacacgtgctaaaataatatccaa 22492486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 23752845 - 23752803
Alignment:
Q  4 cctttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  23752845 cctttgctcaatttatcccatttaccatcatggatgtgtgaca 23752803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 48205017 - 48204977
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||| |||||| ||||||||| ||||||||||||||||    
T  48205017 tttgctccatttacaccatttaccatcatggatgtgtgaca 48204977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 23513711 - 23513894
Alignment:
Q  5 ctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaaca 104  Q
    |||||||||||||| |||||||| | |||||||||  |||||||||| ||| ||||||| |||||||||||||||||||||| |||||||||| ||||||    
T  23513711 ctttgctcaatttatcccatttatcatcatggatgcatgacacgtgtcaaaggaatatctaatggttgaaattaaaaagggagagataggtaacaaaaca 23513810  T
Q  105 aaatccctagcctactactgttcaccttctccttcacgtccccttcccttcaccacctgta---accagcctcttgtcgccgcccaccg 190  Q
    |||||| ||| ||||     ||||| ||||| ||||||| ||||| || ||||||||||||   |||||||||||| ||||| ||||||    
T  23513811 aaatccatagtctac-----ttcactttctctttcacgttccctttccctcaccacctgtaaccaccagcctcttgccgccgtccaccg 23513894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 44321606 - 44321516
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagata 92  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  44321606 ttgcttttgctcaatttaccc-atttaccttcattgatgtgtgacacgtgttaaaagaatattcaatggttgaaattaaaaaggaaaagata 44321516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 54706952 - 54707056
Alignment:
Q  14 atttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaatcccta 113  Q
    ||||| |||||||||  ||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| ||| ||||||||| ||||||||| | ||    
T  54706952 atttatcccatttacgatcatggatgtgtgacacatgtcaaaataatatccaacggttgaaattaaaaaggaaaaaataggtaattaaacaaaattcgta 54707051  T
Q  114 gccta 118  Q
    |||||    
T  54707052 gccta 54707056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 23514535 - 23514452
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagg 84  Q
    ||||||||||||||||||||||||||||  |||||||||||||||| |||  |||| |||||| || ||||||||| |||||||    
T  23514535 ttgcctttgctcaatttaccccatttactatcatggatgtgtgacatgtggcaaaaaaatatctaacggttgaaataaaaaagg 23514452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 16436543 - 16436625
Alignment:
Q  1 ttgcctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaag 83  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||  ||  |||| | |||| || ||||||||||||||||    
T  16436543 ttgcctttgctcaatttatcccatttaccatcatggatgtgtgacatatggcaaaatagtatcaaacggttgaaattaaaaag 16436625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 193
Target Start/End: Original strand, 44320867 - 44320959
Alignment:
Q  98 taaaacaaaatccctagcctactactgttcaccttctccttcacgtccccttcccttcaccacctgtaaccagcctcttgtcgccgcccaccggta 193  Q
    ||||||||||||||||||   | ||||||||| |||| | ||||||| ||||||| ||||| |||||||||| |||| |||||||||| |||||||    
T  44320867 taaaacaaaatccctagc---caactgttcactttcttcctcacgtctccttcccctcaccgcctgtaaccaacctcatgtcgccgccaaccggta 44320959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8922908 - 8922948
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  8922908 tttgctcaatttaccccatttatcatcatggatgtgtgaca 8922948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 8923671 - 8923631
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||| |||||||||||||||| ||||||||||||||||    
T  8923671 tttgctccatttaccccatttaccatcatggatgtgtgaca 8923631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 41325846 - 41325886
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  41325846 tttgctcaatttaccccatttatcatcatggatgtgtgaca 41325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 50107592 - 50107632
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||||||||||||||||||||| | ||||||||||||||||    
T  50107592 tttgctcaatttaccccatttatcatcatggatgtgtgaca 50107632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 10991128 - 10991087
Alignment:
Q  5 ctttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||||||| |||||||||||||||| |||| |||||||||||    
T  10991128 ctttgctccatttaccccatttaccatcatagatgtgtgaca 10991087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 1772891 - 1772931
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||||||||||||||||||||||  |||||||| |||||||    
T  1772891 tttgctcaatttaccccatttactatcatggatatgtgaca 1772931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 34329172 - 34329132
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||||||||||||| ||||||||  ||||||||||||||||    
T  34329172 tttgctcaatttactccatttactatcatggatgtgtgaca 34329132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 41326584 - 41326544
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||| |||||||| ||||||| ||||||||||||||||    
T  41326584 tttgctccatttacccaatttaccatcatggatgtgtgaca 41326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 33361069 - 33361157
Alignment:
Q  4 cctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagata 92  Q
    |||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  33361069 cctttgctcaatttataccatttaccttcatggatgtgtgacacatgttaaaagaatatccaacggttgaaattaaaaagggaaagata 33361157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 20267187 - 20267275
Alignment:
Q  4 cctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagata 92  Q
    ||||||||||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  20267187 cctttgctcaatttatctcatttatcttcatggatgtgcgacacatgttaaaagaatatccaacggttgaaattaaaaagggaaagata 20267275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 20269036 - 20268948
Alignment:
Q  4 cctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagata 92  Q
    ||||||||||||||| | |||||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  20269036 cctttgctcaatttatctcatttatcttcatggatgtgcgacacatgttaaaagaatatccaacggttgaaattaaaaagggaaagata 20268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 41992711 - 41992832
Alignment:
Q  20 cccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaaga-taggtaataaaacaaaatccctagccta 118  Q
    |||||||||||| || ||||||||| | |||  |||| ||||||||| ||||||| || |||||| ||| | || |||||||||||||||||||||||||    
T  41992711 cccatttacctttatagatgtgtgatatgtggcaaaataatatccaacggttgaattttaaaaggaaaaaaataagtaataaaacaaaatccctagccta 41992810  T
Q  119 ctactgttcaccttctccttca 140  Q
      ||||||||| ||||||||||    
T  41992811 gcactgttcactttctccttca 41992832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 41993385 - 41993318
Alignment:
Q  14 atttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaa 81  Q
    |||||||||||||||||| |||||||||||||| |||  |||| | ||||||| |||||| |||||||    
T  41993385 atttaccccatttacctttatggatgtgtgacatgtgacaaaatagtatccaacggttgacattaaaa 41993318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 41283000 - 41282960
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||||||||||  |||||||| ||||||||||||||||    
T  41283000 tttgctcaatttacatcatttaccatcatggatgtgtgaca 41282960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 17625666 - 17625766
Alignment:
Q  14 atttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaatcccta 113  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| ||| | ||||||| ||||||||||||||||    
T  17625666 atttaccccatttaccttcatggatgtgcgacacgtgtcaaaagaatatccaatagttgaaattaaaaa-ggacaaataggtattaaaacaaaatcccta 17625764  T
Q  114 gc 115  Q
    ||    
T  17625765 gc 17625766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 17626394 - 17626316
Alignment:
Q  5 ctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaag 83  Q
    |||||| | |||||||||||||||| |||||||||||||||||||| || || ||||||||| ||||||||| ||||||    
T  17626394 ctttgcaccatttaccccatttaccatcatggatgtgtgacacgtggtataataatatccaacggttgaaataaaaaag 17626316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 3565853 - 3565959
Alignment:
Q  8 tgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaa 107  Q
    ||||| |||||||| ||||||||| || ||||||| ||| ||  ||||| |||||| |||||||||||||||||||| | |  || || |||||||||||    
T  3565853 tgctccatttaccctatttacctttattgatgtgtaacatgttgtaaaataatatctaatggttgaaattaaaaaggtacatgtaagttataaaacaaaa 3565952  T
Q  108 tccctag 114  Q
     ||||||    
T  3565953 cccctag 3565959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 38443060 - 38443098
Alignment:
Q  8 tgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  38443060 tgctccatttaccccatttaccatcatggatgtgtgaca 38443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 128700 - 128794
Alignment:
Q  21 ccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaagggaaagataggtaataaaacaaaatccctagc 115  Q
    |||||||||||||| |||||| ||||||||| ||||||||||| ||||||||||||| |||||||| | ||| ||||||||||||||||||||||    
T  128700 ccatttaccttcatagatgtgcgacacgtgtcaaaagaatatcgaatggttgaaatttaaaagggacaaataagtaataaaacaaaatccctagc 128794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 129400 - 129322
Alignment:
Q  5 ctttgctcaatttaccccatttaccttcatggatgtgtgacacgtgttaaaagaatatccaatggttgaaattaaaaag 83  Q
    |||||| | ||||||| |||||| | |||||||||||||||||||| || |  ||||||||| ||||||||| ||||||    
T  129400 ctttgcaccatttacctcatttatcatcatggatgtgtgacacgtgatatactaatatccaacggttgaaataaaaaag 129322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 18505 - 18545
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    |||| ||||||||| ||||||||| ||||||||||||||||    
T  18505 tttgttcaatttacaccatttaccatcatggatgtgtgaca 18545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 3295841 - 3295801
Alignment:
Q  6 tttgctcaatttaccccatttaccttcatggatgtgtgaca 46  Q
    ||||||| |||||||||||||||| |||||||| |||||||    
T  3295841 tttgctccatttaccccatttaccatcatggatatgtgaca 3295801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University