View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7914_low_4 (Length: 220)
Name: NF7914_low_4
Description: NF7914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7914_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 54405702 - 54405889
Alignment:
| Q |
15 |
aatatgaatactagataagtacttatttggtaacaccgactggacggctgaaactgaaaccatatgctataggttagttaataagttagtagtgattatc |
114 |
Q |
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| T |
54405702 |
aatatgaatactagataagtacttatttggtaacaccgactggacggctgaaactgaaaccatatgctataggttagttaat-agttagtagtgattatc |
54405800 |
T |
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| Q |
115 |
caaagaaggccaatgtggggtccacatcctagatagtttgaaaatatttg-tgtttaggactgaggcacaagtacacatgatcctcaac |
202 |
Q |
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| T |
54405801 |
caaagaaggccaatgtggggtccacatcctagatagtttgaaaatatttgttgtttaggactgaggcacaagtacacatgatcctcaac |
54405889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 54401060 - 54401158
Alignment:
| Q |
102 |
agtagtgattatccaaagaaggccaatgtgggg-tccacatcctagatagtttgaaaatatttg-tgtttaggactgaggcacaagtacacatgatcctc |
199 |
Q |
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| T |
54401060 |
agtagtgattatc-aaagaagaccaatgtgggggtccacattggag-tggtttgaaaatatttgctgtttaggaatga--cacaagtacacatgatcctc |
54401155 |
T |
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