View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7915_high_1 (Length: 727)
Name: NF7915_high_1
Description: NF7915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7915_high_1 |
 | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0157 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 10 - 706
Target Start/End: Complemental strand, 35682 - 34986
Alignment:
| Q |
10 |
catcatcatctcctcataatttgcttataatagtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagacta |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35682 |
catcattatctcctcataatttgcttataatggtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagacta |
35583 |
T |
|
| Q |
110 |
actcaggggaattggctcatgtatgcttactctcacttgaaatagcttatcatccacattgtttactgacttgaccgttggagtttgtgtaggtacacga |
209 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35582 |
actcaagggcattggctcatgtatgcttactctcacccgaaatagcttatcatccacgttgtttactgacttgaccgttggagtttgtgcaggtacacga |
35483 |
T |
|
| Q |
210 |
tccccatatttgctctgagaagaaggttggtgttgttggatcttcaactacgcttacttttagcgtctcttttagttgtcctctctctacacaaaattcg |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
35482 |
tccccatttttgctctgagaagaaggttggtgttgttggatcttcaagtacgcttacttttagcgtctcttttatttgtcctctctctacacaaaactcg |
35383 |
T |
|
| Q |
310 |
ccaccaccatccaaactccaatgaatcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatat |
409 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35382 |
ccaccgccatccaaaatccaatgaatcttcttaagatttggacgtcgtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctccatat |
35283 |
T |
|
| Q |
410 |
ctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggt |
509 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35282 |
ttgtcgatggtcctgcaacacggtttttggcggtggttcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactaat |
35183 |
T |
|
| Q |
510 |
ggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggacc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35182 |
ggcctgagtttttgtctttttgttgcgtggaagttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggacc |
35083 |
T |
|
| Q |
610 |
agtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatggtctgttacgattttgagggatccttggctgtgttg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
35082 |
agtcacgatggtggtgatgaatatgtcatgattcttgataccaaattcgtgttcgcatatggtctgttccaattttgagggatccttggatgtgttg |
34986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 581; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 10 - 706
Target Start/End: Original strand, 12484795 - 12485491
Alignment:
| Q |
10 |
catcatcatctcctcataatttgcttataatagtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagacta |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12484795 |
catcattatctcctcataatttgcttataatggtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagacta |
12484894 |
T |
|
| Q |
110 |
actcaggggaattggctcatgtatgcttactctcacttgaaatagcttatcatccacattgtttactgacttgaccgttggagtttgtgtaggtacacga |
209 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12484895 |
actcaagggcattggctcatgtatgcttactctcacccgaaatagcttatcatccacgttgtttactgacttgaccgttggagtttgtgcaggtacacga |
12484994 |
T |
|
| Q |
210 |
tccccatatttgctctgagaagaaggttggtgttgttggatcttcaactacgcttacttttagcgtctcttttagttgtcctctctctacacaaaattcg |
309 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
12484995 |
tccccatttttgctctgagaagaaggttggtgttgttggatcttcaagtacgcttacttttagcgtctcttttatttgtcctctctctacacaaaactcg |
12485094 |
T |
|
| Q |
310 |
ccaccaccatccaaactccaatgaatcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatat |
409 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12485095 |
ccaccgccatccaaaatccaatgaatcttcttaagatttggacgtcgtttatggtggtgcgacgagcagcttgagccctctgcaccacctacctccatat |
12485194 |
T |
|
| Q |
410 |
ctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggt |
509 |
Q |
| |
|
||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12485195 |
ttgtcgatggtcctgcaacacggtttttggcggtggttcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactaat |
12485294 |
T |
|
| Q |
510 |
ggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggacc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12485295 |
ggcctgagtttttgtctttttgttgcgtggaagttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggacc |
12485394 |
T |
|
| Q |
610 |
agtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatggtctgttacgattttgagggatccttggctgtgttg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
12485395 |
agtcacgatggtggtgatgaatatgtcatgattcttgataccaaattcgtgttcgcatatggtctgttccaattttgagggatccttggatgtgttg |
12485491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 670
Target Start/End: Original strand, 12468671 - 12469331
Alignment:
| Q |
10 |
catcatcatctcctcataatttgcttataatagtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagacta |
109 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12468671 |
catcatcatctcctcataatttgcttacagaggtcccatgaggacaattttccaggtaaaggttcaaggaccaaaaccctaaacctacacaataagacta |
12468770 |
T |
|
| Q |
110 |
actcaggggaattggctcatgtatgcttactctcacttgaaatagcttatcatccacattgtttactgacttgaccgttggagtttgtgtaggtacacga |
209 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||||||| |||||| |||||| |||| | ||||||| |||||| ||||||| | |||| |||||||| | |
|
|
| T |
12468771 |
actcaagggcattggctcaagtatgcttactctcacccgaaataagttatcacccacgtcgtttactaacttgatcgttggattgtgtgcaggtacacca |
12468870 |
T |
|
| Q |
210 |
tccccatatttgctctgagaagaaggttggtgttgttggatcttcaactacgcttacttttagcgtctcttttagttgtcctctctctacacaaaattcg |
309 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || | ||||||||||||||| ||| |
|
|
| T |
12468871 |
tccccatatttgccctgagaagaaggttggtgttgttggatcttcaaatacccttacttttagcgtctcttttctctgccatctctctacacaaaactcg |
12468970 |
T |
|
| Q |
310 |
ccaccaccatccaaactccaatgaatcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatat |
409 |
Q |
| |
|
||||| ||| ||| | |||||| ||||| ||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
12468971 |
ccaccgccacccagaatccaatacatcttcttaagatgtaaacgtcgtttatggtggtgcgatgagcatcttgagccctctgcaccacctacctccatat |
12469070 |
T |
|
| Q |
410 |
ctgtcgatggtcctgcaacatgatttttggtcgtggttcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggt |
509 |
Q |
| |
|
|| |||| |||||||| | ||| | | ||||||||| |||||||||| || |||||| |||||||||||||||||| | |||||||||| | |
|
|
| T |
12469071 |
ttgacgatagtcctgcacggcggtttgttgcggtggttcgagctctagtgggatcataatatatgttgcggctttgtttcttgggttattcaacactgat |
12469170 |
T |
|
| Q |
510 |
ggcctgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggacc |
609 |
Q |
| |
|
||||| |||||| ||||||||||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
12469171 |
ggccttagttttcatctttttgttgtgtggttgttgataccagatatgttttctctcttggtgaggttttgttttctcgcaacgtgggttgtgatggact |
12469270 |
T |
|
| Q |
610 |
agtcacgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatg |
670 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||| |
|
|
| T |
12469271 |
ggtcacgatggtggtgatgaatatgtcacgattggtgataccaaatcaatgttcgtatatg |
12469331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 670
Target Start/End: Original strand, 12466036 - 12466687
Alignment:
| Q |
14 |
atcatctcctcataatttgcttataatagtcccataaggacagtagtccaggtaaaggttcaaggaccgaaaccctaaacctacacaataagactaactc |
113 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
12466036 |
atcatctcctcataatttgcttacagtggtcccatgaggacagttttcctggtaaaggttcaaggaccgaaaccctaaacctacacattatgactaactc |
12466135 |
T |
|
| Q |
114 |
aggggaattggctcatgtatgcttactctcacttgaaatagcttatcatccacattgtttactgacttgaccgttggagtttgtgtaggtacacgatccc |
213 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||||| |||||| |||||| ||| | ||||||| |||||| ||||||| | |||| |||||||| ||||| |
|
|
| T |
12466136 |
aagggcattggctcaggtatgcttactctcactcgaaatacgttatcacccaagtcgtttactaacttgatcgttggattgtgtgcaggtacaccatccc |
12466235 |
T |
|
| Q |
214 |
catatttgctctgagaagaaggttggtgttgttggatcttcaactacgcttacttttagcgtctcttttagttgtcctctctctacacaaaattcgccac |
313 |
Q |
| |
|
||||||||| |||| || || |||||||||| ||||||||||| ||| ||||||||||||||||||||| || | ||||||||||||||| ||||||| |
|
|
| T |
12466236 |
catatttgccctga-aaaaatgttggtgttgatggatcttcaaatacccttacttttagcgtctcttttctctgccatctctctacacaaaactcgccac |
12466334 |
T |
|
| Q |
314 |
caccatccaaactccaatgaatcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgt |
413 |
Q |
| |
|
||||| || | |||||| ||| ||||||||| ||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
12466335 |
caccacccggaatccaatacatc---ttaagatgtagacgtcgtttatggtggtgtgatgagcatcttgagccctctgcaccacctacctccatatttga |
12466431 |
T |
|
| Q |
414 |
cgatggtcctgcaacatgatttttggtcgtggttcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcc |
513 |
Q |
| |
|
| || ||||| || | ||||| | ||||||||| ||||| |||| | |||||||||||||| ||||||||||||| | |||||||||| ||||| |
|
|
| T |
12466432 |
caatagtcctacacggcggttttttgcggtggttcgagctctaatgggattgtaatatgtgttgcagctttgtttctctggttgttcaacactgatggcc |
12466531 |
T |
|
| Q |
514 |
tgagtttttgtctttttgttgcgtggatgttgatatgagatttgttttctctcttggtgaggttatgttttctcgcaacgtgagtggtgatggaccagtc |
613 |
Q |
| |
|
| |||||| ||||||||||| |||| |||||||| |||| |||||||||||||||||||||| ||||||||||||| ||| || ||||||||| ||| |
|
|
| T |
12466532 |
ttagttttcatctttttgttgtgtggttgttgataccagatatgttttctctcttggtgaggttttgttttctcgcaatgtgggttgtgatggactggtc |
12466631 |
T |
|
| Q |
614 |
acgatggtggtgatgaatatgtcatgattcttgataccaaatccgtgttcgcatatg |
670 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||||| |||||| ||||| |
|
|
| T |
12466632 |
acgatggtggtgatg-atatgtcacgattggtgataccaaatcaatgttcgtatatg |
12466687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 334 - 572
Target Start/End: Complemental strand, 6410395 - 6410151
Alignment:
| Q |
334 |
atcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgcaacatgat |
433 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||| || ||| ||||||||||| || |
|
|
| T |
6410395 |
atcttcttaagatgtagacgtcgtttatggtggtgcgacgagcggcttgtgccctccgcatcacctacctccaaatatgttgatggtcctgc-acggcgg |
6410297 |
T |
|
| Q |
434 |
ttttggtcgtggt--------tcgacctctagtggggtcgtaatatgtgttgcggctttgtttctctagcctttcaacactggtggcctgagtttttgtc |
525 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||| | |||||||| ||| ||||||||| ||| |||||| ||| |||||||| |||| ||| |
|
|
| T |
6410296 |
ttttggcggtggttccagcggtcgacctcttgtggggtcgtgaattgtgttgcagctctgtttctctggccgttcaactctgatggcctgatttttcgtc |
6410197 |
T |
|
| Q |
526 |
tttttgttgcgtggatgttgatatgagatttgttttctctcttggtg |
572 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||||||||||||| |
|
|
| T |
6410196 |
-ttttgttgcgtggtggctgatacaagattcaatttctctcttggtg |
6410151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 38093724 - 38093658
Alignment:
| Q |
355 |
cgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtc |
421 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
38093724 |
cgtttatggtggtgcgacgagcggcttaagccctctgcaccacctacctccagatctgccgatggtc |
38093658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 631
Target Start/End: Original strand, 47518421 - 47518480
Alignment:
| Q |
572 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatgaat |
631 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
47518421 |
gaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatgaat |
47518480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 55729202 - 55729142
Alignment:
| Q |
361 |
tggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtc |
421 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||||||||| || || |||||||| |
|
|
| T |
55729202 |
tggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatatgccgatggtc |
55729142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 552 - 622
Target Start/End: Original strand, 23054177 - 23054254
Alignment:
| Q |
552 |
gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtg |
622 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| | ||||||||||| |||||||||||||| |
|
|
| T |
23054177 |
gatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtg |
23054254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 334 - 424
Target Start/End: Original strand, 38530932 - 38531022
Alignment:
| Q |
334 |
atcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctg |
424 |
Q |
| |
|
||||| ||||||||| || |||||||||||||||||||||||| ||||| |||||| ||||||||||| |||| || |||||||||||||| |
|
|
| T |
38530932 |
atcttcttaagatgtagaggtcgtttatggtggtgcgacgagcggcttgagccctccgcaccacctacttccagatatgtcgatggtcctg |
38531022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 575 - 628
Target Start/End: Original strand, 1551571 - 1551624
Alignment:
| Q |
575 |
gttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
628 |
Q |
| |
|
||||||||| |||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
1551571 |
gttatgtttgctcgcaacataggtggtgatggatcagtcacgatggtggtgatg |
1551624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 552 - 628
Target Start/End: Original strand, 17281887 - 17281970
Alignment:
| Q |
552 |
gatttgttttctctcttggt-------gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
628 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| | ||||||||||| ||||||| |||||||||||| |
|
|
| T |
17281887 |
gatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatggatcagtcacaatggtggtgatg |
17281970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 355 - 423
Target Start/End: Complemental strand, 32059028 - 32058960
Alignment:
| Q |
355 |
cgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcct |
423 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
32059028 |
cgtttatggtggtgcgaccagcggcttgagccctccgcaccacctacctccagatctgtcgatggtcct |
32058960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 628
Target Start/End: Complemental strand, 34118124 - 34118068
Alignment:
| Q |
572 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
628 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| | |||||||||||||||||| |
|
|
| T |
34118124 |
gaggttatgtttgctcgcaacataggtggtgatggatcggtcacgatggtggtgatg |
34118068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 335 - 424
Target Start/End: Complemental strand, 30845943 - 30845854
Alignment:
| Q |
335 |
tcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctg |
424 |
Q |
| |
|
|||| ||||||||| || | |||||||||||||||||||||| ||||| ||||| |||||||||||||||| || || ||||||||||| |
|
|
| T |
30845943 |
tcttcttaagatgtagaggccgtttatggtggtgcgacgagcggcttgaaccctccgcaccacctacctccagatttgccgatggtcctg |
30845854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 42449 - 42536
Alignment:
| Q |
334 |
atcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtc |
421 |
Q |
| |
|
||||| ||| ||||| || || ||||||||||||||||||||| |||| |||||| |||||||||||||||| ||||| |||||||| |
|
|
| T |
42449 |
atcttcttacgatgtagaggttgtttatggtggtgcgacgagcggcttaagccctccgcaccacctacctccagatctgccgatggtc |
42536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 340 - 426
Target Start/End: Complemental strand, 6444433 - 6444347
Alignment:
| Q |
340 |
ttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggtcctgca |
426 |
Q |
| |
|
||||||| | || |||||||||||||||| ||||||| ||||| | |||| ||| || ||||||||| |||||| |||||||||||| |
|
|
| T |
6444433 |
ttaagatctagatgtcgtttatggtggtgtgacgagcggcttgtgtcctccgcatcagctacctccagatctgtggatggtcctgca |
6444347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 628
Target Start/End: Complemental strand, 10408977 - 10408921
Alignment:
| Q |
572 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
628 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| | |||||||||||||||||| |
|
|
| T |
10408977 |
gaggttatgtttgctcgcaacataggtggtgatggaacggtcacgatggtggtgatg |
10408921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 624
Target Start/End: Original strand, 27170059 - 27170111
Alignment:
| Q |
572 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggt |
624 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| | |||||||||||||| |
|
|
| T |
27170059 |
gaggttatgtttgctcgcaacgtaagtggtgatggatcggtcacgatggtggt |
27170111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 572 - 628
Target Start/End: Complemental strand, 18697085 - 18697029
Alignment:
| Q |
572 |
gaggttatgttttctcgcaacgtgagtggtgatggaccagtcacgatggtggtgatg |
628 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
18697085 |
gaggttatgtttgcccgcaacataggtggtgatggatcagtcacgatggtggtgatg |
18697029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 326 - 420
Target Start/End: Complemental strand, 12156900 - 12156806
Alignment:
| Q |
326 |
tccaatgaatcttgttaagatgtggacgtcgtttatggtggtgcgacgagcagcttgggccctctgcaccacctacctccatatctgtcgatggt |
420 |
Q |
| |
|
|||||| |||||| ||| ||||| || | |||| |||||||||||||||| |||| ||| || |||||||||||||||| ||| | ||||||| |
|
|
| T |
12156900 |
tccaatcaatcttcttacgatgtagaggccgttattggtggtgcgacgagcggcttaagccttccgcaccacctacctccagatccgccgatggt |
12156806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 51264155 - 51264197
Alignment:
| Q |
62 |
caggtaaaggttcaaggaccgaaaccctaaacctacacaataa |
104 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
51264155 |
caggtaaaggttcaaggaccaaaaacctaaacctacactataa |
51264197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University