View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7915_low_3 (Length: 351)
Name: NF7915_low_3
Description: NF7915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7915_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 154 - 334
Target Start/End: Complemental strand, 7436800 - 7436624
Alignment:
| Q |
154 |
cactatttaaattctgtctagatcaacaatttatacagtgatagaaagacaaccgtattttactaaagcttttttctataataactttactcttttctca |
253 |
Q |
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| T |
7436800 |
cactatttaaattctgtctagatcaacaatttatacagtgatagaaagacaaccgta----actaaagcttttttctatgataactttactcttttctca |
7436705 |
T |
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| Q |
254 |
aacagaaattcctgtataactcataatcaaagcctactttgactacaaattaaactctattgcaagtgttattaatacaag |
334 |
Q |
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| T |
7436704 |
aacagaaattcctgtataactcataatcaaagcctactttgactacaaattaaactctatttcaagtgtgattaatacaag |
7436624 |
T |
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Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 7436953 - 7436856
Alignment:
| Q |
1 |
aacatttttagagttgaatattaaaagggtatagttgtataaacatcaagtattatgtcctacatctattggtttaacttaacaaaaggcatatgccc |
98 |
Q |
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| T |
7436953 |
aacatttttagagttgaatattaaaagggtatagttgtataaacatcaagtattaggtcctacatctattggtttaacttaacaaaaggcatatgccc |
7436856 |
T |
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