View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7916_low_1 (Length: 424)
Name: NF7916_low_1
Description: NF7916
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7916_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 26846755 - 26847143
Alignment:
| Q |
18 |
cattttcaagtgaaaataatagttgttctcaaagttcattcaaagagaacatggtttgtgacacagtttcaaccagtagcatttccgaatacttaattga |
117 |
Q |
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| T |
26846755 |
cattttcaagtgaaaataatagttgttctcaaagttcattcaaagagaacatggtttgtgacacagtttcaaccagtagcatttccgaatacttgattga |
26846854 |
T |
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| Q |
118 |
aacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaataacgttttctgtaataaggtaattggtgcacttttttgttctctt |
217 |
Q |
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| T |
26846855 |
aacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaataacgttttctgtaataaggtaattggtgcacttttttgttccctt |
26846954 |
T |
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| Q |
218 |
tctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagttggatatgttttttggtattgtttcaggattatt |
317 |
Q |
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| T |
26846955 |
tctttcttttagtattcagaagacctagctagctatttttcttctactcaattaattaaaataagttggatatgttttttggtattgtttcaggattatt |
26847054 |
T |
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| Q |
318 |
atgaacggaaccaagatcttcaagttataaacatgtctgactgggtaccacaatctcaagttagattccctcagcttagtgctaattcg |
406 |
Q |
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| T |
26847055 |
atgaacagaaccaagatcttcaagttataaacatgtctgactgggtaccacaatctcaagttagattccctcagcttagtgctaattcg |
26847143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 54881424 - 54881513
Alignment:
| Q |
83 |
gtttcaaccagtagcatttccgaatacttaattgaaacgattcctggttactgcatggaggacctttttgatgcttcttttgcacctaat |
172 |
Q |
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| T |
54881424 |
gtttcaacaagcagcatttctgaatacttgattgaaacaatacctggttactgttttgaagaccttcttgatgcttctttcccacctaat |
54881513 |
T |
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