View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7917_low_1 (Length: 444)
Name: NF7917_low_1
Description: NF7917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7917_low_1 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 31034062 - 31033623
Alignment:
| Q |
1 |
taaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcaaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31034062 |
taaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcgaagtc |
31033963 |
T |
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| Q |
101 |
gtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggctggcattcta |
200 |
Q |
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| T |
31033962 |
gtggactaaccctttaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatctcatatctgcttcaggctggcattcta |
31033863 |
T |
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| Q |
201 |
gtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggttt---------------tttgtgtgtgatccttgtgt |
285 |
Q |
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| T |
31033862 |
gtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggtttttggagtgtttagtgttggtgtgtgatccttgtgt |
31033763 |
T |
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| Q |
286 |
agtcagtcagctgcttagtcttcaccgaagtgtattttgattctggttttgttgtggaggacctggaattgttttgttgcgcaatgtactatgggacttt |
385 |
Q |
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| T |
31033762 |
agtcagtcagctgcttagtcttcaccgaagtgtattttgattctcgttttgttgtggaggacctggaattgttttgttgcgcaatgtactatgggacttt |
31033663 |
T |
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| Q |
386 |
gaagcaagtaatttctgtgtgaagcttggtggtgaaggtg |
425 |
Q |
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| T |
31033662 |
gaagcaagtaatttgtgcgtgaagcttggtggtgaaggtg |
31033623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 259
Target Start/End: Original strand, 31097993 - 31098170
Alignment:
| Q |
82 |
gatattcaatatcaaagtcgtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatct |
181 |
Q |
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||||| ||||||| ||| ||||||||| ||| || || ||||||| ||||| || |||||||||| ||||||| | | ||||| | ||||| ||||| |
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| T |
31097993 |
gatatacaatatcgcagtggtggactaaacctttagtttgtttaggacttggcatcgagtcagaagactaggggaggttttgtgtaaatatctcgtatct |
31098092 |
T |
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| Q |
182 |
gcttcaggctggcattctagtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttga |
259 |
Q |
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| T |
31098093 |
gactcaggctggcattgtagtcagggatagttaaaatcattacttctgaagtgggaggaaggcaatgcaatgtcttga |
31098170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 31093211 - 31093302
Alignment:
| Q |
37 |
aaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcaaagtcgtggactaaccctctaccttttttagga |
128 |
Q |
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| T |
31093211 |
aaatgctttcccggaactggatgagatcaaaatcattgggatatggatatgcaatatcacattagtggactaaccctctagcttgtttagga |
31093302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 30941 - 31319
Alignment:
| Q |
1 |
taaaagtgtttcaaccgatactatttcggaaaaggtaaatgctttcctgaaactggataaggtcataatcatcagggtttggatattcaatatcaaagtc |
100 |
Q |
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||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| |
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| T |
30941 |
taaaaatgtttcgaccgatactatttcagaaaaggtaagtgctttcctgaaactggataaggtcaaaatcatcgaggtttggatatgcaatatcaaagtt |
31040 |
T |
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| Q |
101 |
gtggactaaccctctaccttttttaggagttggcgtcaagtcagaagataaggggagatctggtgtagaaatctcatatctgcttcaggctggcattcta |
200 |
Q |
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| T |
31041 |
gtggactaaccctctaccttttttaggagttggcgtcaagtcagaagattaggggagatctggtgtagaaatcccatttctgcttcaggctggcattcta |
31140 |
T |
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| Q |
201 |
gtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggttt---------------tttgtgtgtgatccttgtgt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
31141 |
gtcagggatggtaaaaatcattacttctgaaatgggaggtaggaaatgcaatgtgttgagggtttttggagtgtttagtgttggtgtgtgatccttgtgt |
31240 |
T |
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| Q |
286 |
agtcagtcagctgcttagtcttcaccgaagtgtattttgattctggttttgttgtggaggacctggaattgttttgttg |
364 |
Q |
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| T |
31241 |
agtcagtcagctgcttagtcttcaccgaagtgtattttgattctggttttgttgtggaggacctggaattgttttgttg |
31319 |
T |
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