View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7917_low_2 (Length: 317)

Name: NF7917_low_2
Description: NF7917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7917_low_2
NF7917_low_2
[»] chr8 (11 HSPs)
chr8 (19-244)||(12173931-12174164)
chr8 (19-244)||(12418359-12418592)
chr8 (19-106)||(12185395-12185482)
chr8 (19-106)||(12429823-12429910)
chr8 (236-314)||(12174198-12174279)
chr8 (236-314)||(12185710-12185791)
chr8 (236-314)||(12418626-12418707)
chr8 (236-314)||(12430138-12430219)
chr8 (117-242)||(12185550-12185674)
chr8 (117-242)||(12429978-12430102)
chr8 (19-59)||(5583567-5583607)
[»] chr3 (1 HSPs)
chr3 (145-223)||(4272021-4272103)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 12173931 - 12174164
Alignment:
Q  19 gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaaaataattttaacttagtgatttcaa--------aaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         | ||    
T  12173931 gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaacataattttaacttagtgatttcagtgtatagtatat 12174030  T
Q  111 aattttcaagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattgggagttccatagacacttcgctgaaaattcattgc 210  Q
     | | ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12174031 taatatcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattgggagttccatagacactttgctgaaaattcattgc 12174130  T
Q  211 gggtggaactgtttcttcttgatcatcagattca 244  Q
     |||||||||||||||||||| ||||||||||||    
T  12174131 tggtggaactgtttcttcttgctcatcagattca 12174164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 12418359 - 12418592
Alignment:
Q  19 gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaaaataattttaacttagtgatttcaa--------aaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||         | ||    
T  12418359 gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaacataattttaacttagtgatttcagtgtatagtatat 12418458  T
Q  111 aattttcaagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattgggagttccatagacacttcgctgaaaattcattgc 210  Q
     | | ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  12418459 taatatcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattgggagttccatagacactttgctgaaaattcattgc 12418558  T
Q  211 gggtggaactgtttcttcttgatcatcagattca 244  Q
     |||||||||||||||||||| ||||||||||||    
T  12418559 tggtggaactgtttcttcttgctcatcagattca 12418592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 12185395 - 12185482
Alignment:
Q  19 gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaaaataattttaacttagtgatttcaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||    
T  12185395 gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctgttcaaattttcaaacataatttcaagttagtgatttcaa 12185482  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 12429823 - 12429910
Alignment:
Q  19 gaggtctccgccaaatccaatatgcaagagttcttcaagtacactcctgttcaaattttcaaaaataattttaacttagtgatttcaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||    
T  12429823 gaggtctccgccaaatccaatatgcaagagttcttcaagtacacccctgttcaaattttcaaacataatttcaagttagtgatttcaa 12429910  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 12174198 - 12174279
Alignment:
Q  236 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 314  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12174198 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 12174279  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 12185710 - 12185791
Alignment:
Q  236 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 314  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12185710 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 12185791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 12418626 - 12418707
Alignment:
Q  236 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 314  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12418626 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 12418707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 236 - 314
Target Start/End: Original strand, 12430138 - 12430219
Alignment:
Q  236 tcagattcacatccttc---ttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 314  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12430138 tcagattcacatccttcttcttcctcgacaacttgaccttctgaggaatatatccatcgaaaaccacactcttttatcgctg 12430219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 12185550 - 12185674
Alignment:
Q  117 caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgctgaaaattcattgcggg 213  Q
    |||| ||||||||||||||    ||||||||||||| ||||||  ||| |||||||||||||   ||||||||||||||| |||||||||||||||| ||    
T  12185550 caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg 12185645  T
Q  214 tggaactgtttcttcttgatcatcagatt 242  Q
    |||||||||||||||||| ||||||||||    
T  12185646 tggaactgtttcttcttgctcatcagatt 12185674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 117 - 242
Target Start/End: Original strand, 12429978 - 12430102
Alignment:
Q  117 caagtaattttccctaagaagattaccttaagtcttttgtttccactgcttccagattggga---gttccatagacacttcgctgaaaattcattgcggg 213  Q
    |||| ||||||||||||||    ||||||||||||| ||||||  ||| |||||||||||||   ||||||||||||||| |||||||||||||||| ||    
T  12429978 caagcaattttccctaaga----taccttaagtcttctgtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctgg 12430073  T
Q  214 tggaactgtttcttcttgatcatcagatt 242  Q
    |||||||||||||||||| ||||||||||    
T  12430074 tggaactgtttcttcttgctcatcagatt 12430102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 5583567 - 5583607
Alignment:
Q  19 gaggtctccgccaaatccaatatgcaagagttcttcaagta 59  Q
    ||||||||| |||||||| |||| |||||||||||||||||    
T  5583567 gaggtctccaccaaatccgatattcaagagttcttcaagta 5583607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 4272103 - 4272021
Alignment:
Q  145 taagtcttttgtttccactgctt-ccagattgg---gagttccatagacacttcgctgaaaattcattgcgggtggaactgtt 223  Q
    ||||||||||| ||| ||||||| |||||||||   ||||||||||||||||| |||||||| ||||||  ||||||||||||    
T  4272103 taagtcttttgcttctactgctttccagattggaaagagttccatagacactttgctgaaaaatcattgttggtggaactgtt 4272021  T

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