View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7917_low_3 (Length: 277)
Name: NF7917_low_3
Description: NF7917
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7917_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36417673 - 36417446
Alignment:
| Q |
1 |
aggggatagcaacccaaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagc |
100 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36417673 |
aggggatatcatcccaaaaaataaatcacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagc |
36417574 |
T |
|
| Q |
101 |
tacaagaattgcagccaacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactac |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417573 |
tacaagaattgcagctaacctctttttatcaaggactcctttgctttttttgttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactac |
36417474 |
T |
|
| Q |
201 |
acttaaaagtggtgtcaaatttataaac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36417473 |
acttaaaagtggtgtcaaatttataaac |
36417446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 33 - 228
Target Start/End: Complemental strand, 36412310 - 36412115
Alignment:
| Q |
33 |
ccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagccaacctctttttatcaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36412310 |
ccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagctacaagaattgcagctaacctctttttatcaa |
36412211 |
T |
|
| Q |
133 |
ggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgtcaaatttataaac |
228 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36412210 |
ggactcctttgctttttttgttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgtcaaatttataaac |
36412115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36426501 - 36426278
Alignment:
| Q |
1 |
aggggatagcaacccaaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagc |
100 |
Q |
| |
|
|||||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
36426501 |
aggggatatcatcccaaaaaataaattacataccctttctctttttcttccacatgtaattcacacagaagaggaggatgacaattgcaactatagaagc |
36426402 |
T |
|
| Q |
101 |
tacaagaattgcagccaacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctga---taagaaaaaacaagtccaaagaagtttaaac |
197 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||| || ||| |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
36426401 |
tacaagaattgcagctaacctctttttgccaaggactcctttgctttttttgtcgtagttagctgacgctaagaagaaacaagtccaaagaagtttaaac |
36426302 |
T |
|
| Q |
198 |
tacacttaaaagtggtgtcaaattta |
223 |
Q |
| |
|
||||| | ||||||||||||||||| |
|
|
| T |
36426301 |
tacac--ataagtggtgtcaaattta |
36426278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 36398070 - 36397865
Alignment:
| Q |
16 |
aaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagc |
115 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| ||| |||| ||||||||||| ||| |||| | |||| |||| |
|
|
| T |
36398070 |
aaaaaatcaatcacataccctttctttttttcttccacatgtaattcacacaagagaggagaatgacgattgcaactattgaaactaccataattacagc |
36397971 |
T |
|
| Q |
116 |
caacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||| |
|
|
| T |
36397970 |
caacctctttttatcaaggactcctttgctttttttgttgtaattagctgataagaagaaacaagtccagagaagtttaaactacac--ataagtggtgt |
36397873 |
T |
|
| Q |
216 |
caaattta |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
36397872 |
caaattta |
36397865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 36405005 - 36404800
Alignment:
| Q |
16 |
aaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagc |
115 |
Q |
| |
|
|||||| | ||| |||||||||| | |||||||||||||||||||| |||||| ||| |||||||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
36405005 |
aaaaaaaaaatcgcataccctttgtttttttcttccacatgtaatttacacaggagaggaggatgacaattgcaacaatagaagctaccagaattgcagc |
36404906 |
T |
|
| Q |
116 |
caacctctttttatcaaggactcctttgcnnnnnnngttgtaattagctgataagaaaaaacaagtccaaagaagtttaaactacacttaaaagtggtgt |
215 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||||||||||||||||| || | ||||||||||| |||||||||||| || | ||||| ||| |
|
|
| T |
36404905 |
caacctctttttgtcaagtgctcctttgctttttttgttgtaattagctgatataaagatacaagtccaaataagtttaaactatac--ataagtgctgt |
36404808 |
T |
|
| Q |
216 |
caaattta |
223 |
Q |
| |
|
|||||||| |
|
|
| T |
36404807 |
caaattta |
36404800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 36388291 - 36388165
Alignment:
| Q |
16 |
aaaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagc |
115 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||||| ||||||||| ||| ||||| || |||||||| |||||||||||||||||||||||| |
|
|
| T |
36388291 |
aaaaaataaatcacataccctccctttttttcttccacatgtagttcacacaggagaggaggaggacaattgcaattatagaagctacaagaattgcagc |
36388192 |
T |
|
| Q |
116 |
caacctctttttatcaaggactccttt |
142 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
36388191 |
caacctctttttatcaagaactccttt |
36388165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 36434324 - 36434194
Alignment:
| Q |
17 |
aaaaatatatcacataccctttctctttttcttccacatgtaattcacacagaagaaga---ggatgataattgcaactatagaagctacaagaattgca |
113 |
Q |
| |
|
||||||| || ||||||||||| | |||||||||||| || ||| ||||||| ||| || ||| ||||| ||||||||||||||||| | ||||||| |
|
|
| T |
36434324 |
aaaaataaattacataccctttgtttttttcttccacttgcaatacacacaggagaggacgaggacgataacagcaactatagaagctaccaaaattgca |
36434225 |
T |
|
| Q |
114 |
gccaacctctttttatcaaggactcctttgc |
144 |
Q |
| |
|
|||||||| || |||| | ||||||| |||| |
|
|
| T |
36434224 |
gccaaccttttcttatgagggactccgttgc |
36434194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 36374326 - 36374207
Alignment:
| Q |
25 |
atcacataccctttctctttttcttccacatgtaattcacacagaagaagaggatgataattgcaactatagaagctacaagaattgcagccaacctctt |
124 |
Q |
| |
|
|||||||||| ||||| ||||||||||| || || |||| || ||| ||||| || ||| |||||| ||||||| || |||||||||| | |||||| |
|
|
| T |
36374326 |
atcacataccgtttcttgttttcttccacctgcaaaacacaaaggagaggaggaggacaatcgcaactgtagaagcaaccagaattgcagaaatcctctt |
36374227 |
T |
|
| Q |
125 |
tttatcaaggactcctttgc |
144 |
Q |
| |
|
|| | | ||||||||||||| |
|
|
| T |
36374226 |
ttgacctaggactcctttgc |
36374207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University