View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7918_low_1 (Length: 403)
Name: NF7918_low_1
Description: NF7918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7918_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 6117433 - 6117806
Alignment:
| Q |
16 |
aaatatttttcatatgataaaccgactatttaaaaaacttataatttatggttgttcatttatatatagctagaataaatatcagttnnnnnnnccttta |
115 |
Q |
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| T |
6117433 |
aaatatttttcatatgataaactgagtatttaaaaaacttataatttatggttgttcatttatatatagctagaataaatatcagttaaaaaaaccttta |
6117532 |
T |
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| Q |
116 |
caatatgtagacgattgtatacatagaaaaatttgcagttgactaaagtgccattaaaggactatacaagaaacttataaacatatgcattcaaa--aca |
213 |
Q |
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| T |
6117533 |
caatatgtagacgattgtatacatagaaaaatttgcagttgactaaagtgccattaaaggactatacaagaaacttataaacatatgcattcaaaatata |
6117632 |
T |
|
| Q |
214 |
tatatctttaccaacattattattgttagtagtgataatcgtccttgtagaatagaaggttatagctaggtttgatatggcctatccaaaaaatccatca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6117633 |
tatatctttaccaacattattattgttagtagtgataatcgtccttgtagagtagaaggtta----taggtttgatatggcctatccaaaaaatccatca |
6117728 |
T |
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| Q |
314 |
tcttttaaattcatatccatggacaaaaccaaaattaataatactgacctacaattgcaacaataatagtactagtat |
391 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6117729 |
tcttttaaattcatatccatggtcaaaaccaaaattaataatactggcctacaattgcaacaataatagtactagtat |
6117806 |
T |
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