View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7918_low_3 (Length: 327)

Name: NF7918_low_3
Description: NF7918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7918_low_3
NF7918_low_3
[»] chr7 (23 HSPs)
chr7 (11-311)||(23373322-23373623)
chr7 (175-311)||(47113186-47113322)
chr7 (175-311)||(43516977-43517114)
chr7 (177-311)||(22589271-22589405)
chr7 (197-311)||(5776823-5776938)
chr7 (175-311)||(39296605-39296735)
chr7 (198-311)||(21801314-21801427)
chr7 (174-247)||(14624738-14624810)
chr7 (208-310)||(10877129-10877232)
chr7 (174-247)||(3562529-3562601)
chr7 (174-247)||(13577882-13577954)
chr7 (174-247)||(27869291-27869363)
chr7 (174-247)||(31494046-31494118)
chr7 (189-311)||(21809902-21810025)
chr7 (180-247)||(35337624-35337690)
chr7 (204-259)||(14196947-14197004)
chr7 (174-247)||(11843274-11843346)
chr7 (174-247)||(21224448-21224520)
chr7 (174-247)||(24597611-24597683)
chr7 (175-259)||(38722900-38722984)
chr7 (174-247)||(42271468-42271540)
chr7 (182-258)||(4193675-4193750)
chr7 (180-248)||(36746605-36746672)
[»] chr8 (15 HSPs)
chr8 (180-311)||(2053248-2053380)
chr8 (174-247)||(19391483-19391555)
chr8 (180-247)||(4518969-4519035)
chr8 (173-259)||(16233581-16233667)
chr8 (174-247)||(5192367-5192439)
chr8 (174-247)||(19924401-19924473)
chr8 (174-247)||(21666370-21666442)
chr8 (174-247)||(38630191-38630263)
chr8 (180-227)||(132538-132584)
chr8 (204-259)||(18881628-18881683)
chr8 (180-310)||(22845698-22845828)
chr8 (175-249)||(7117211-7117284)
chr8 (174-256)||(31268405-31268487)
chr8 (174-248)||(32400418-32400491)
chr8 (174-247)||(12723357-12723429)
[»] chr3 (18 HSPs)
chr3 (180-311)||(36033658-36033789)
chr3 (180-311)||(34296448-34296580)
chr3 (180-310)||(9662348-9662479)
chr3 (174-248)||(3328909-3328982)
chr3 (174-259)||(3821006-3821090)
chr3 (174-247)||(8542746-8542818)
chr3 (180-257)||(22416460-22416536)
chr3 (174-247)||(26628121-26628193)
chr3 (174-247)||(48907388-48907460)
chr3 (180-257)||(1718293-1718369)
chr3 (174-247)||(4522090-4522162)
chr3 (174-247)||(8339036-8339108)
chr3 (180-247)||(27852854-27852919)
chr3 (174-247)||(3781014-3781086)
chr3 (87-135)||(10743421-10743467)
chr3 (174-247)||(28154978-28155050)
chr3 (174-247)||(34878625-34878697)
chr3 (180-247)||(32960745-32960810)
[»] chr5 (12 HSPs)
chr5 (198-311)||(24025123-24025237)
chr5 (180-311)||(36954473-36954606)
chr5 (174-247)||(25556971-25557043)
chr5 (174-247)||(245730-245802)
chr5 (174-247)||(16901093-16901165)
chr5 (174-247)||(18695139-18695211)
chr5 (180-247)||(26639139-26639205)
chr5 (180-258)||(17825599-17825676)
chr5 (174-247)||(19169479-19169551)
chr5 (174-247)||(36641279-36641351)
chr5 (174-247)||(40428735-40428807)
chr5 (182-305)||(28538515-28538637)
[»] chr4 (20 HSPs)
chr4 (157-311)||(16291761-16291914)
chr4 (180-289)||(14857424-14857534)
chr4 (180-311)||(43336041-43336172)
chr4 (174-259)||(25618724-25618807)
chr4 (174-247)||(13397771-13397843)
chr4 (174-247)||(27018350-27018422)
chr4 (175-310)||(12101223-12101358)
chr4 (174-247)||(5304443-5304515)
chr4 (174-247)||(6789054-6789126)
chr4 (174-247)||(13826515-13826587)
chr4 (174-247)||(15058914-15058986)
chr4 (180-247)||(2715819-2715885)
chr4 (180-259)||(4098781-4098859)
chr4 (175-257)||(16964688-16964771)
chr4 (201-311)||(55264976-55265086)
chr4 (174-247)||(4357388-4357460)
chr4 (174-247)||(35475425-35475497)
chr4 (174-247)||(43793727-43793799)
chr4 (219-311)||(53097290-53097383)
chr4 (189-265)||(5931971-5932047)
[»] chr2 (13 HSPs)
chr2 (175-310)||(2123447-2123583)
chr2 (180-310)||(13645903-13646033)
chr2 (206-311)||(32677955-32678061)
chr2 (205-311)||(36199516-36199623)
chr2 (174-247)||(18537924-18537996)
chr2 (180-247)||(17368352-17368418)
chr2 (174-247)||(38716329-38716401)
chr2 (180-247)||(15735200-15735266)
chr2 (174-247)||(9787695-9787767)
chr2 (174-247)||(11176043-11176115)
chr2 (174-256)||(4104920-4105001)
chr2 (174-247)||(6763813-6763885)
chr2 (174-247)||(30714370-30714442)
[»] chr1 (19 HSPs)
chr1 (75-311)||(28552305-28552550)
chr1 (109-311)||(6285198-6285409)
chr1 (174-247)||(3616935-3617007)
chr1 (174-247)||(24962089-24962161)
chr1 (174-247)||(27092948-27093020)
chr1 (205-257)||(36486321-36486373)
chr1 (180-247)||(29676215-29676281)
chr1 (246-311)||(39386510-39386576)
chr1 (174-247)||(19078021-19078093)
chr1 (174-247)||(19125911-19125983)
chr1 (174-247)||(24196397-24196469)
chr1 (174-247)||(24749934-24750006)
chr1 (174-247)||(48471959-48472031)
chr1 (174-249)||(16551739-16551813)
chr1 (85-135)||(43706899-43706947)
chr1 (174-247)||(4059618-4059690)
chr1 (174-247)||(28920752-28920825)
chr1 (229-304)||(6285358-6285434)
chr1 (64-135)||(16972096-16972164)
[»] chr6 (10 HSPs)
chr6 (147-258)||(29365416-29365535)
chr6 (174-247)||(35102587-35102659)
chr6 (175-289)||(11661016-11661131)
chr6 (174-268)||(20863824-20863918)
chr6 (174-247)||(34834061-34834133)
chr6 (182-247)||(4597509-4597573)
chr6 (174-247)||(25819820-25819892)
chr6 (180-247)||(24051144-24051210)
chr6 (223-288)||(9620513-9620579)
chr6 (174-247)||(14572274-14572346)
[»] scaffold0025 (2 HSPs)
scaffold0025 (174-247)||(19418-19490)
scaffold0025 (180-247)||(61950-62018)
[»] scaffold0019 (1 HSPs)
scaffold0019 (175-311)||(35883-36013)
[»] scaffold0607 (1 HSPs)
scaffold0607 (174-247)||(2145-2217)
[»] scaffold0007 (1 HSPs)
scaffold0007 (174-247)||(250614-250686)
[»] scaffold0419 (1 HSPs)
scaffold0419 (180-247)||(3062-3128)
[»] scaffold1875 (1 HSPs)
scaffold1875 (204-257)||(881-934)
[»] scaffold0406 (1 HSPs)
scaffold0406 (174-247)||(2127-2199)
[»] scaffold0087 (1 HSPs)
scaffold0087 (174-247)||(25060-25132)
[»] scaffold0001 (1 HSPs)
scaffold0001 (174-247)||(142043-142115)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 23373322 - 23373623
Alignment:
Q  11 gagatgaacaaaatattcttattcttattttttaagtttaatttgatcttttaattaaaatgtagactaaattacacttttcgccacctaa-ttttaata 109  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||| ||||||||    
T  23373322 gagatgaacaaaatattcttattcatattttttaagtttaatttgatcttttaattaaaatgtaggttaaatttcacttttcgccacctaagttttaata 23373421  T
Q  110 aaatgttgcgattttggccccctattnnnnnnntgaaaattttatctcttaattttacaaaacgttgctaagaagacgccacgtgacccaaaacaagggg 209  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||    
T  23373422 aaatgttgcgattttggccccctattaaaaaaatgaaaattttatctcttaattttacaaaacgttgttgagaagacgccacgtgacccaaaacaatggg 23373521  T
Q  210 ccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcctaaagatggagagttaaaagagcatatttctataaagttagagggtcaaa 309  Q
    || ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||    
T  23373522 ccgaaattgcaactatttgtaaatataaagggtcaaaagagcttatttcctaaagatggagagttaaaagagcatatttccataatgttagagggtcgaa 23373621  T
Q  310 ag 311  Q
    ||    
T  23373622 ag 23373623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 47113322 - 47113186
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagt 273  Q
    |||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||| ||||||| ||||||||| ||| |     
T  47113322 tgctaaaaagacgccacgtgtcccaaaaca-ggggccaaaatcgcaactttttataaagataaagggccaaaagatcttatttccctaaagatagagggc 47113224  T
Q  274 taaaagagcatatttctataaagttagagggtcaaaag 311  Q
     |||||||||||||||  ||||||||||||||||||||    
T  47113223 caaaagagcatatttccctaaagttagagggtcaaaag 47113186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 175 - 311
Target Start/End: Original strand, 43516977 - 43517114
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagctta-tttcctaaagatggagagt 273  Q
    |||| ||||||||||||||| | ||||||| || | |||||||| |||||||| |||| ||||||||||| ||||| ||| |||||||||||| ||| ||    
T  43516977 tgctgagaagacgccacgtgtctcaaaacagggtgtcaaaattgaaactttttgtaaagataaagggtcagaagagtttattttcctaaagatagagggt 43517076  T
Q  274 taaaagagcatatttctataaagttagagggtcaaaag 311  Q
    |||||||||||||||  || ||||||||| ||||||||    
T  43517077 taaaagagcatattttcatgaagttagagagtcaaaag 43517114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 22589405 - 22589271
Alignment:
Q  177 ctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagctta-tttcctaaagatggagagtta 275  Q
    ||||||||| |||||||  || |||||   ||||||||||||||| ||||| |||| |||||| |||||||||||||| |||||| ||||| |||    |    
T  22589405 ctaagaagatgccacgtatcctaaaactgagggccaaaattgcaattttttgtaaagataaagagtcaaaagagcttattttcctgaagatagaggaaca 22589306  T
Q  276 aaagagcatatttctataaagttagagggtcaaaag 311  Q
    ||||||||||||| ||||||||||||||||||||||    
T  22589305 aaagagcatattt-tataaagttagagggtcaaaag 22589271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 5776938 - 5776823
Alignment:
Q  197 ccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagttaaaagagcatatttctataaa 295  Q
    |||||||| ||||||||||| ||||||||||  ||| || || || ||||||||||||||| ||| ||||| ||| | ||||||||||||||||| ||||    
T  5776938 ccaaaacatggggccaaaatcgcaactttttgcaaagatgaatggccaaaagagcttatttccctcaagatagagggctaaaagagcatatttctctaaa 5776839  T
Q  296 gttagagggtcaaaag 311  Q
     |||||| ||||||||    
T  5776838 attagagagtcaaaag 5776823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 39296735 - 39296605
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagt 273  Q
    |||| ||||||||||||||| ||||||| | |||| ||||||||||||||||| |||  |||||||       ||||||||||  ||||||||  ||  |    
T  39296735 tgctgagaagacgccacgtgccccaaaatagggggtcaaaattgcaactttttgtaatgataaagg-------gagcttatttatctaaagataaaggat 39296643  T
Q  274 taaaagagcatatttctataaagttagagggtcaaaag 311  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  39296642 taaaagagtatatttccataaagttagagggtcaaaag 39296605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 21801427 - 21801314
Alignment:
Q  198 caaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc-ctaaagatggagagttaaaagagcatatttctataaag 296  Q
    |||| ||| ||||||||||  ||| ||||| |||| ||||||||||||||||||||||||| ||||| ||  | ||| |||| | |||||||  ||||||    
T  21801427 caaatcaaagggccaaaatgacaattttttgtaaagataaagggtcaaaagagcttatttctctaaa-ataaatagtcaaaataacatattttcataaag 21801329  T
Q  297 ttagagggtcaaaag 311  Q
    |||||||||||||||    
T  21801328 ttagagggtcaaaag 21801314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 14624810 - 14624738
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||| | |||||||| ||||||| ||||||||| |||||||||||||| |||| ||||||||||||||    
T  14624810 ttgctgagaacatgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaagggtcaaaa 14624738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 10877129 - 10877232
Alignment:
Q  208 ggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc-ctaaagatggagagttaaaagagcatatttctataaagttagagggtc 306  Q
    ||||||||| |||||||||||| || |||||||| ||||| | |||||||| |||||| | |||  | |||||||||||||||  || ||||| ||||||    
T  10877129 ggccaaaatcgcaactttttattaagataaagggccaaaatatcttatttctctaaaggtagaggatcaaaagagcatatttccctagagttaaagggtc 10877228  T
Q  307 aaaa 310  Q
    ||||    
T  10877229 aaaa 10877232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 3562529 - 3562601
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| || |||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  3562529 ttgctgagaagacgccacgtgtcctaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 3562601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 13577882 - 13577954
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||||||  |||||| ||||||||| |||| ||||||||| || | ||||||||||||||    
T  13577882 ttgctgagaagacgccacgtgttccaaaa-aaggggccataatttcaactttttgtatagataaagggtcaaaa 13577954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 27869291 - 27869363
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||| ||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  27869291 ttgctgagaagacgccatgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 27869363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 31494118 - 31494046
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||||||  |||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  31494118 ttgctgagaagacgccacgtgttccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 31494046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 311
Target Start/End: Complemental strand, 21810025 - 21809902
Alignment:
Q  189 cacgtgacccaaaacaaggggccaaaattgcaacttttta-taaatataaagggtcaaaagagcttatttcctaaagatggagagttaaaagagcatatt 287  Q
    |||||| | |||||||| ||||||||||  ||| |||||  |||| |||||||||||||| |||||||||| | || ||  | ||| |||| | ||||||    
T  21810025 cacgtgtcacaaaacaaagggccaaaatgacaatttttttgtaaagataaagggtcaaaatagcttatttctttaaaataaatagtcaaaataacatatt 21809926  T
Q  288 tctataaagttagagggtcaaaag 311  Q
    |  |||||||||||||| ||||||    
T  21809925 tgcataaagttagagggacaaaag 21809902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 35337624 - 35337690
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  35337624 agaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 35337690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 14196947 - 14197004
Alignment:
Q  204 aaggggccaaaattgcaactttttat--aaatataaagggtcaaaagagcttatttcc 259  Q
    ||||||||| |||||||||||||| |  ||| |||||||||||||||||| |||||||    
T  14196947 aaggggccataattgcaactttttttgtaaagataaagggtcaaaagagcatatttcc 14197004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 11843274 - 11843346
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||||| |  ||||| ||||||||| |||||||||||||| |||  |||| |||||||||    
T  11843274 ttgctgagaagacgccacgt-attcaaaaaaaggggccataattgcaactttttgtaaggataaggggtcaaaa 11843346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 21224448 - 21224520
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| | ||||| || |||||| ||| |||||||||| |||| |||| |||||||||    
T  21224448 ttgctgagaagacgccacgtgtctcaaaa-aaagggccataatcgcaactttttgtaaagataaggggtcaaaa 21224520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 24597611 - 24597683
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| | |||| |||||||||| ||| |||||||||| |||| | || |||||||||    
T  24597611 ttgctgagaagacgccacgtgtctcaaa-caaggggccataatcgcaactttttgtaaagagaaggggtcaaaa 24597683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 38722900 - 38722984
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaacttttt-ataaatataaagggtcaaaagagcttatttcc 259  Q
    |||| ||||| ||||||||| ||||||| ||||||||||||| ||||||||||  |||| |||| ||  ||||||||| |||||||    
T  38722900 tgctgagaagccgccacgtgtcccaaaa-aaggggccaaaatcgcaactttttggtaaagataagggtccaaaagagcatatttcc 38722984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 42271540 - 42271468
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||||||  |||||| || |||||| ||| |||||||||| |||| |||| |||||||||    
T  42271540 ttgctgagaagacgccacgtgttccaaaa-aaagggccataatcgcaactttttgtaaacataaggggtcaaaa 42271468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 4193750 - 4193675
Alignment:
Q  182 aagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc 258  Q
    |||||| |||||| | ||||| ||||||||| ||||||||||||||  ||| |||| ||||||||||| | ||||||    
T  4193750 aagacgtcacgtgtctcaaaa-aaggggccataattgcaactttttgaaaagataaggggtcaaaagatcatatttc 4193675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 248
Target Start/End: Original strand, 36746605 - 36746672
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaag 248  Q
    ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||| |||||    
T  36746605 agaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggttaaaag 36746672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 2053380 - 2053248
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc-ctaaagatggagagttaaaa 278  Q
    |||||| |||||||  ||||||||| ||||| |||||||||||||||||||||  |||||||||||||||||||||||| |||||||| ||| |||||||    
T  2053380 agaagatgccacgtatcccaaaacagggggctaaaattgcaactttttataaaggtaaagggtcaaaagagcttatttctctaaagatagagggttaaaa 2053281  T
Q  279 gagcatatttctataaagttagagggtcaaaag 311  Q
    ||||||||||| ||||||||||| | |||||||    
T  2053280 gagcatatttccataaagttagatgatcaaaag 2053248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 19391483 - 19391555
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  19391483 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 19391555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 4518969 - 4519035
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  4518969 agaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 4519035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 16233667 - 16233581
Alignment:
Q  173 gttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc 259  Q
    |||||| |||||||  |||||| ||||||||| ||||||| |||||||||||||| |||| ||||  || | ||||||| |||||||    
T  16233667 gttgctgagaagacatcacgtgtcccaaaacagggggccataattgcaactttttgtaaagataagagggcgaaagagcatatttcc 16233581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 5192367 - 5192439
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| ||||  ||||||||    
T  5192367 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataagaggtcaaaa 5192439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 19924473 - 19924401
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  19924473 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 19924401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 21666370 - 21666442
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||| ||| ||||||| ||||||||| |||||||||||| | |||| |||| |||||||||    
T  21666370 ttgctgagaagacgccatgtgtcccaaaa-aaggggccataattgcaactttatctaaagataaggggtcaaaa 21666442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 38630263 - 38630191
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  38630263 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 38630191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 132584 - 132538
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaacttttt 227  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||||    
T  132584 agaagccgccacgtgtcccaaaa-aaggggccaaaattgcaacttttt 132538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 18881628 - 18881683
Alignment:
Q  204 aaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc 259  Q
    |||||| || |||||||||||||| |||| |||| ||||||||||||| |||||||    
T  18881628 aaggggtcataattgcaactttttgtaaagataaggggtcaaaagagcgtatttcc 18881683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 310
Target Start/End: Complemental strand, 22845828 - 22845698
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagctta-tttcctaaagatggagagttaaaa 278  Q
    |||||||  |||||| ||||||||| |||||  |||| | |||||||| || |||||||| | |||||||||||| ||| |||||||| ||| || ||||    
T  22845828 agaagacatcacgtgtcccaaaaca-ggggctcaaatcgtaactttttgtacatataaagagacaaaagagcttatttttctaaagatagagggtcaaaa 22845730  T
Q  279 gagcatatttctataaagttagagggtcaaaa 310  Q
    || ||||||  | ||||||| | |||||||||    
T  22845729 gaacatattcatctaaagttggcgggtcaaaa 22845698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 249
Target Start/End: Original strand, 7117211 - 7117284
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaaga 249  Q
    |||| |||||||||||| || ||||||| ||||| ||| |||||||||||||| |||| |||| |||| ||||||    
T  7117211 tgctgagaagacgccacatgtcccaaaaaaaggg-ccataattgcaactttttgtaaagataaggggttaaaaga 7117284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 31268487 - 31268405
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatt 256  Q
    |||||||||||||||| | || ||||||| | |||  || |||  |||||||||||||| |||||||||| ||||||| ||||    
T  31268487 ttgctaagaagacgccgcatgtcccaaaaaaggggatcataatcacaactttttataaagataaagggtctaaagagcatatt 31268405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 32400418 - 32400491
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaag 248  Q
    ||||| ||||||| |||||||  |||||| |||||| || |||||||||||||| |||| ||||| |||||||||    
T  32400418 ttgctgagaagacaccacgtgttccaaaa-aaggggtcataattgcaactttttgtaaagataaatggtcaaaag 32400491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 12723357 - 12723429
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||| ||| ||||||| ||||| ||| ||| |||||||||| |||| |||| |||||||||    
T  12723357 ttgctgagaagacgccatgtgtcccaaaa-aagggaccataatcgcaactttttgtaaagataacgggtcaaaa 12723429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 36033789 - 36033658
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaa 278  Q
    ||||||||||||||| |||||  || |||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||| ||| |||| ||    
T  36033789 agaagacgccacgtgtcccaactca-ggggccaaaattgcaactttttgtaaatatagatggtcaaaagagcttatttccttaaagatagagggttagaa 36033691  T
Q  279 gagcatatttctataaagttagagggtcaaaag 311  Q
    ||||||||||| |||||||||||||||||||||    
T  36033690 gagcatatttccataaagttagagggtcaaaag 36033658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 34296448 - 34296580
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagttaaaa 278  Q
    |||||||| ||||||  |||||||| || |||||||||||||||||||  ||| |||||| || || ||||||||||| |||||||||  || || ||||    
T  34296448 agaagacgtcacgtgttccaaaacagggagccaaaattgcaacttttttgaaagataaagagttaagagagcttatttccctaaagataaagggtcaaaa 34296547  T
Q  279 gagcatatttctataaagttagagggtcaaaag 311  Q
    ||||||||||| |||||||||||||||||||||    
T  34296548 gagcatatttccataaagttagagggtcaaaag 34296580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 9662348 - 9662479
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagttaaaa 278  Q
    |||||| |||||||| || |||||| | ||||||  |||||||||||| |||| |||| |||||||||||| |||||| |||||  || ||| ||||||     
T  9662348 agaagatgccacgtgtcctaaaacaggaggccaatgttgcaactttttgtaaagataaggggtcaaaagagattatttccctaattatagagggttaaac 9662447  T
Q  279 gagcatatttctataaagttagagggtcaaaa 310  Q
    || |||||||| ||||||||||||||| ||||    
T  9662448 gatcatatttccataaagttagagggttaaaa 9662479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 3328909 - 3328982
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaag 248  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| ||||||||||    
T  3328909 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaag 3328982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 3821090 - 3821006
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc 259  Q
    ||||| ||||||| |||| || ||||||| |||||| || ||| |||||||||| |||| |||||||||||||||||| |||||||    
T  3821090 ttgctgagaagacaccacatgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaagggtcaaaagagcatatttcc 3821006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 8542818 - 8542746
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| | ||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  8542818 ttgctgagaagacgccacgtgtcacaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 8542746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 22416536 - 22416460
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt 257  Q
    ||||||||||||||| ||||||  |||||| || |||||||||||||| |||| |||| ||||||||||||| |||||    
T  22416536 agaagacgccacgtgtcccaaat-aaggggtcataattgcaactttttgtaaagataatgggtcaaaagagcatattt 22416460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 26628121 - 26628193
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  26628121 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 26628193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 48907388 - 48907460
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  48907388 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttttaaagataaggggtcaaaa 48907460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 1718369 - 1718293
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt 257  Q
    |||| |||||||||| ||||||||| | ||||||||||||||| | |  |||| ||||| ||||||||||||||||||    
T  1718369 agaaaacgccacgtgtcccaaaacaggaggccaaaattgcaac-tctggtaaagataaatggtcaaaagagcttattt 1718293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 4522162 - 4522090
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||| | ||| |||||||||| |||| |||| |||||||||    
T  4522162 ttgctgagaagacgccacgtgtcccaaaa-aaggggcaataatcgcaactttttgtaaagataaggggtcaaaa 4522090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 8339036 - 8339108
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||| ||||| ||| |||||||||| |||| |||| |||||||||    
T  8339036 ttgctgagaagacgccacgtgtcccaaaa-aagaggccataatcgcaactttttgtaaagataaggggtcaaaa 8339108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 27852854 - 27852919
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||  ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  27852854 agaagacgccacgtgtcccaaa--aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 27852919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 3781086 - 3781014
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||| ||||||| ||||||| |||||| || | | |||||||||| |||| ||||||||||||||    
T  3781086 ttgctgagaagacaccacgtgtcccaaaa-aaggggtcatattcgcaactttttgtaaagataaagggtcaaaa 3781014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 10743421 - 10743467
Alignment:
Q  87 cttttcgccacctaattttaataaaatgttgcgattttggccccctatt 135  Q
    ||||||||| ||||| |||  ||||||||||||||||||||||||||||    
T  10743421 cttttcgccccctaagttt--taaaatgttgcgattttggccccctatt 10743467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 28154978 - 28155050
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| || |||||| ||| |||||||||| |||| ||||  ||||||||    
T  28154978 ttgctgagaagacgccacgtgtcccaaaa-aaagggccataatcgcaactttttgtaaagataagaggtcaaaa 28155050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 34878625 - 34878697
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||| |||| ||||| |||||||| |||| |||| || ||||||    
T  34878625 ttgctgagaagacgccacgtgtcccaaaa-aaggtgccataattgaaactttttgtaaagataagggatcaaaa 34878697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 32960745 - 32960810
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||  ||||| ||| |||||||||| |||| |||| |||||||||    
T  32960745 agaagacgccacgtgtcccaaaaaaa--ggccataatcgcaactttttgtaaagataaggggtcaaaa 32960810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 24025237 - 24025123
Alignment:
Q  198 caaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc-ctaaagatggagagttaaaagagcatatttctataaag 296  Q
    ||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||  |||||    
T  24025237 caaaacaggaggccaaaattgcaactttttgtaaagataaagggtcaaaagagcttatttctctaaagatagagtgttaaaagagcatatttccgtaaag 24025138  T
Q  297 ttagagggtcaaaag 311  Q
    |||||||||||||||    
T  24025137 ttagagggtcaaaag 24025123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 36954473 - 36954606
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaa 278  Q
    |||||| | |||||| ||||||||| | | |||||||||||||||||| |||| ||||||||| ||| |||| ||||||| |||||||  || |||||||    
T  36954473 agaagaggtcacgtgtcccaaaaca-gtgaccaaaattgcaactttttgtaaagataaagggtaaaatgagcatatttccttaaagatatagggttaaaa 36954571  T
Q  279 gagcatatt-tc-tataaagttagagggtcaaaag 311  Q
    || |||||| || |||||||||||| |||||||||    
T  36954572 gaacatattctcgtataaagttagatggtcaaaag 36954606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 25556971 - 25557043
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  25556971 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 25557043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 245802 - 245730
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  245802 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 245730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 16901093 - 16901165
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  16901093 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 16901165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 18695211 - 18695139
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  18695211 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 18695139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 26639139 - 26639205
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||| |||| |||||||||    
T  26639139 agaagacgccacgtgtcccaaaa-aagaggccataattgcaactttttgtaaagataaggggtcaaaa 26639205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 17825599 - 17825676
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc 258  Q
    ||||||||||||||| ||||||| ||||||||| ||| ||||||||||   || |||||||||||||||| | ||||||    
T  17825599 agaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgacaagataaagggtcaaaagaacatatttc 17825676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 19169551 - 19169479
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||||||  | |||| || |||||| |||||||||||||| |||| |||| |||||||||    
T  19169551 ttgctgagaagacgccacgtgttcaaaaa-aatgggccataattgcaactttttgtaaagataaggggtcaaaa 19169479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 36641351 - 36641279
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||| ||| ||||||| |||||  || ||| ||||||||||||||| |||| |||||||||    
T  36641351 ttgctgagaagacgccatgtgtcccaaaa-aagggatcataatcgcaactttttataaagataacgggtcaaaa 36641279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 40428735 - 40428807
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||| ||||| |||| |||| |||||||||    
T  40428735 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaattttttgtaaagataaggggtcaaaa 40428807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 28538515 - 28538637
Alignment:
Q  182 aagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaaga 280  Q
    ||||||||||||| ||||||| | |||| |||||||||| |||||  |||| |||||||| ||| |   ||||||||| ||||||| ||||   ||||||    
T  28538515 aagacgccacgtgtcccaaaata-ggggtcaaaattgcagcttttcgtaaagataaagggccaacatgtcttatttccctaaagatagagacc-aaaaga 28538612  T
Q  281 gcatatttctataaagttagagggt 305  Q
    |||||||||| |||| || ||||||    
T  28538613 gcatatttctctaaaatttgagggt 28538637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 157 - 311
Target Start/End: Original strand, 16291761 - 16291914
Alignment:
Q  157 cttaattttacaaaacgttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatt 256  Q
    |||||||||||||| |  |||| ||||||||||||||||||||||||| |||||| ||||  ||||||||| |||| |||| ||| ||||||| ||||||    
T  16291761 cttaattttacaaagc--tgctgagaagacgccacgtgacccaaaacagggggcctaaatcacaactttttgtaaagataaggggacaaaagatcttatt 16291858  T
Q  257 t-cctaaagatggagagttaaaagagcatatttctataaagttagagggtcaaaag 311  Q
    | ||||||||| ||| | ||||||||||||||||  ||||||||||||||||||||    
T  16291859 tccctaaagatagagggctaaaagagcatatttccctaaagttagagggtcaaaag 16291914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 14857534 - 14857424
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttc-ctaaagatggagagttaaaa 278  Q
    ||||||||||| ||| ||||||| | ||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| |||||||| ||| |||||||    
T  14857534 agaagacgccatgtgtcccaaaatagggggcaaaaattgaaactttttgtaaagataaagggtcaaaagagcttatttctctaaagatagagggttaaaa 14857435  T
Q  279 gagcatatttc 289  Q
    |||| ||||||    
T  14857434 gagcttatttc 14857424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 311
Target Start/End: Original strand, 43336041 - 43336172
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaa 278  Q
    ||||||||||||||| |   ||||| || ||| |||| |||||||||| |||| |||||||||| ||| | ||||||||| ||||||| ||  || ||||    
T  43336041 agaagacgccacgtgtcttgaaacagggagccgaaatcgcaactttttgtaaagataaagggtc-aaacatcttatttccataaagatagaaggtcaaaa 43336139  T
Q  279 gagcatatttctataaagttagagggtcaaaag 311  Q
    || ||||||||  ||||||||||||||||||||    
T  43336140 gaacatatttccctaaagttagagggtcaaaag 43336172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 25618724 - 25618807
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc 259  Q
    ||||| ||||||||||||||| |||||||  |||||||| ||| || ||||||| |||| |||| ||||||||||||| |||||||    
T  25618724 ttgctgagaagacgccacgtgtcccaaaa--aggggccataatcgccactttttgtaaagataaggggtcaaaagagcatatttcc 25618807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 13397771 - 13397843
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  13397771 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 13397843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 27018422 - 27018350
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| |||  |||| |||||||||    
T  27018422 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaggataaggggtcaaaa 27018350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 12101223 - 12101358
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagt 273  Q
    |||| |||||||||||| || | ||||||| || | ||||||||||||||||| |||| ||||  ||  |||||| ||||||| ||||||||| |||       
T  12101223 tgctgagaagacgccacatgtctcaaaaca-ggagtcaaaattgcaactttttgtaaagataacaggctaaaagaacttattttcctaaagatagagtac 12101321  T
Q  274 taaaagagcatatttctataaagttagagggtcaaaa 310  Q
     |||  ||||||||||| |||||||||||||||||||    
T  12101322 caaagaagcatatttctctaaagttagagggtcaaaa 12101358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 5304443 - 5304515
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| || |||||| ||| |||||||||| |||| |||| |||||||||    
T  5304443 ttgctgagaagacgccacgtgtcccaaaa-aatgggccataatcgcaactttttgtaaagataaggggtcaaaa 5304515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 6789054 - 6789126
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||||||||| ||||||| |||||| || ||| |||| ||||| |||| |||| |||||||||    
T  6789054 ttgctaagaagacgccacgtgtcccaaaaaaagggg-cataatcgcaattttttgtaaagataacgggtcaaaa 6789126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 13826515 - 13826587
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||| | ||| |||||||||| |||| |||| |||||||||    
T  13826515 ttgctgagaagacgccacgtgtcccaaaa-aaggggctataatcgcaactttttgtaaagataaggggtcaaaa 13826587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 15058914 - 15058986
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||| | ||| |||||||||| |||| |||| |||||||||    
T  15058914 ttgctgagaagacgccacgtgtcccaaaa-aaggggctataatcgcaactttttgtaaagataaggggtcaaaa 15058986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 2715819 - 2715885
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| || |||||| ||| |||||||||| |||| |||| |||||||||    
T  2715819 agaagacgccacgtgtcccaaaa-aatgggccataatcgcaactttttgtaaagataaggggtcaaaa 2715885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 259
Target Start/End: Complemental strand, 4098859 - 4098781
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc 259  Q
    ||||||||||||||| ||||||| ||||||||  ||||||||||||||   || |||| ||||||||||| | |||||||    
T  4098859 agaagacgccacgtgtcccaaaa-aaggggccttaattgcaactttttgagaagataaggggtcaaaagatcatatttcc 4098781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 16964771 - 16964688
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggcc-aaaattgcaactttttataaatataaagggtcaaaagagcttattt 257  Q
    |||| ||||||||||||||| ||  | |||||||||| |||||||||| |||||||||| ||||| || ||||| ||| |||||    
T  16964771 tgctgagaagacgccacgtgtccttagacaaggggccaaaaattgcaaatttttataaagataaatggccaaaatagcatattt 16964688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 55265086 - 55264976
Alignment:
Q  201 aacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagttaaaagagcatatttctataaagtta 299  Q
    |||| ||||||||||| |||||||||| |||| |||||| ||| ||| | ||||||| |||||||||  || | ||||| | |||||||   ||||||||    
T  55265086 aacatggggccaaaatcgcaactttttgtaaagataaagagtcgaaatatcttatttccctaaagataaag-ggtaaaaaaacatattttcctaaagtta 55264988  T
Q  300 gagggtcaaaag 311  Q
    ||||||||||||    
T  55264987 gagggtcaaaag 55264976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 4357460 - 4357388
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||| ||| ||||||| || |||||| ||| |||||||||| |||| |||| |||||||||    
T  4357460 ttgctgagaagacgccaggtgtcccaaaa-aaagggccataatcgcaactttttgtaaagataaggggtcaaaa 4357388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 35475497 - 35475425
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| || ||||||| |||| |||| |||||||||    
T  35475497 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgctactttttgtaaagataaggggtcaaaa 35475425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 43793727 - 43793799
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||| || ||||||| |||||| || | | |||||||||| ||||||||| |||||||||    
T  43793727 ttgctgagaagacgccacatgtcccaaaa-aaggggtcatattcgcaactttttgtaaatataaggggtcaaaa 43793799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 311
Target Start/End: Complemental strand, 53097383 - 53097290
Alignment:
Q  219 caactttttataaatataaagggtcaaaagagctta-tttcctaaagatggagagttaaaagagcatatttctataaagttagagggtcaaaag 311  Q
    |||||||||||||  ||||||||| |||||| |||| |||||||||||| |||    |||| ||||||||||  ||||||| ||||||| ||||    
T  53097383 caactttttataatgataaagggttaaaagatcttattttcctaaagatagaggaccaaaatagcatatttcgctaaagttggagggtcgaaag 53097290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 5931971 - 5932047
Alignment:
Q  189 cacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcctaaaga 265  Q
    |||||| || |||||||||||||| ||||  |||||||| |||| |||  ||| |||| ||||||||||||| ||||    
T  5931971 cacgtgtcctaaaacaaggggccataattataactttttgtaaagatagggggccaaaggagcttatttccttaaga 5932047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 2123583 - 2123447
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagt 273  Q
    |||| |||||||||||| || ||||||||| || | ||||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||| |||  |    
T  2123583 tgctgagaagacgccacatgtcccaaaacagggtgtcaaaattgcaactttttgtaaagataaagggtcaaaagaacttatttccctaaagatagaggat 2123484  T
Q  274 taaaagagcatatttctataaagttagagggtcaaaa 310  Q
     ||||||||||||||||||||| ||||||||||||||    
T  2123483 caaaagagcatatttctataaacttagagggtcaaaa 2123447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 180 - 310
Target Start/End: Original strand, 13645903 - 13646033
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagttaaaa 278  Q
    ||||||||||||||| |||| | || |||||||||||||||||||||  |||| ||| ||| |||||||||||||||| ||||||||| ||| |||||||    
T  13645903 agaagacgccacgtgtcccacatcagggggccaaaattgcaacttttg-taaagatagaggttcaaaagagcttattttcctaaagatagagggttaaaa 13646001  T
Q  279 gagcatatttctataaagttagagggtcaaaa 310  Q
    ||||||||||  ||| ||||||||||||||||    
T  13646002 gagcatatttacatacagttagagggtcaaaa 13646033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 206 - 311
Target Start/End: Original strand, 32677955 - 32678061
Alignment:
Q  206 ggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaagagcatatttctataaagttagaggg 304  Q
    ||||||||||||  ||||||||||||| |||| | ||||||||||| ||||||| ||||| |  ||||||||||||||||||||| ||||||||||||||    
T  32677955 ggggccaaaattataactttttataaagataaggcgtcaaaagagcgtatttccctaaaggtatagagttaaaagagcatatttccataaagttagaggg 32678054  T
Q  305 tcaaaag 311  Q
    |||||||    
T  32678055 tcaaaag 32678061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 36199623 - 36199516
Alignment:
Q  205 aggggccaaaattgcaactttttataaatataaagggtcaaaagagctta-tttcctaaagatggagagttaaaagagcatatttctataaagttagagg 303  Q
    ||||| ||||||||||||||||| |||| ||||||||| ||||  ||||| |||||||||||| ||| || |||| |||||||||  ||||||||| | |    
T  36199623 aggggtcaaaattgcaactttttgtaaagataaagggttaaaattgcttattttcctaaagatagagtgtcaaaaaagcatattttcataaagttaaatg 36199524  T
Q  304 gtcaaaag 311  Q
    ||||||||    
T  36199523 gtcaaaag 36199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 18537924 - 18537996
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  18537924 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 18537996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 17368418 - 17368352
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  17368418 agaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 17368352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 38716401 - 38716329
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  38716401 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 38716329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 15735266 - 15735200
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  15735266 agaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 15735200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 9787767 - 9787695
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| | |||||||| |||| |||| |||||||||    
T  9787767 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgtaactttttgtaaagataaggggtcaaaa 9787695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 11176115 - 11176043
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||  ||||||||| |||| |||| |||||||||    
T  11176115 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcacaactttttgtaaagataaggggtcaaaa 11176043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 256
Target Start/End: Original strand, 4104920 - 4105001
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatt 256  Q
    ||||| |||||||||||||||  || ||| |||||| || ||| |||||||||| ||||||||| | ||||||||||| ||||    
T  4104920 ttgctgagaagacgccacgtgttcctaaa-aaggggtcataatcgcaactttttgtaaatataaggtgtcaaaagagcatatt 4105001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 6763813 - 6763885
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||  ||| || ||||||| |||| |||| |||||||||    
T  6763813 ttgctgagaagacgccacgtgtcccaaaa-aaggggccgtaatcgctactttttgtaaagataaggggtcaaaa 6763885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 30714370 - 30714442
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||| || ||||||| ||||||||| |||  ||||||||| |||| |||| |||||||||    
T  30714370 ttgctgagaagacgccacatgtcccaaaa-aaggggccataatcacaactttttgtaaagataacgggtcaaaa 30714442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 75 - 311
Target Start/End: Original strand, 28552305 - 28552550
Alignment:
Q  75 gactaaattacacttttcgccacctaattttaataaaatgttgcgattttggccccctattnnnnnnn-tgaaaattttatctcttaattttacaaaacg 173  Q
    ||||||| | ||||||||||| ||||| ||| |  ||||||||||||||||| ||||||||        ||||||||||| |  ||||||||||||||||    
T  28552305 gactaaagtgcacttttcgccccctaagtttca--aaatgttgcgattttggtcccctattaaagaaaatgaaaattttaccctttaattttacaaaacg 28552402  T
Q  174 ttgctaa--------gaagacgccacgtgacccaaaacaagggg-ccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaa 263  Q
    |||| ||        ||||| |||||||| | ||||| | |||| |||||||||||||||||| |||| || ||||||||||||||||||||| ||||||    
T  28552403 ttgcaaacctgcttagaagatgccacgtgtctcaaaataggggggccaaaattgcaactttttgtaaagattaagggtcaaaagagcttatttccctaaa 28552502  T
Q  264 gatggagagttaaaagagcatatttctataaagttagagggtcaaaag 311  Q
    ||| ||| |||||||||||||||||  ||||||||||| |||||||||    
T  28552503 gatagagggttaaaagagcatattttcataaagttagaaggtcaaaag 28552550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 109 - 311
Target Start/End: Original strand, 6285198 - 6285409
Alignment:
Q  109 aaaatgttgcgattttggccccctattnnnnnnntgaaaattttatctcttaattttacaaaacgttgctaag--------aagacgccacgtgacccaa 200  Q
    |||||||||||||||||| ||||||||       ||||||||||| | ||||||||||||||||||||| |||        |||||||||| || | | |    
T  6285198 aaaatgttgcgattttggtcccctattaaaaaaatgaaaattttaccccttaattttacaaaacgttgcaaagttgttgagaagacgccacatgtctcga 6285297  T
Q  201 aacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttat-ttcctaaagatggagagttaaaagagcatatttctataaagtta 299  Q
    || |||||| ||||||||||||||||| |||| ||||| |||||| ||||||||| | |||||| || ||| || ||||||||||||||  |||||||||    
T  6285298 aataaggggtcaaaattgcaactttttgtaaagataaatggtcaatagagcttatatccctaaatatagagggtcaaaagagcatattttcataaagtta 6285397  T
Q  300 gagggtcaaaag 311  Q
    ||||||||||||    
T  6285398 gagggtcaaaag 6285409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 3617007 - 3616935
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  3617007 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 3616935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 24962161 - 24962089
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  24962161 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 24962089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 27092948 - 27093020
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||||||  |||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  27092948 ttgctgagaagacgccacgtgttccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 27093020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 36486321 - 36486373
Alignment:
Q  205 aggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt 257  Q
    ||||| ||||||||||||||||| |||| ||||||||||||||| ||||||||    
T  36486321 aggggtcaaaattgcaactttttgtaaagataaagggtcaaaagtgcttattt 36486373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 29676281 - 29676215
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||| ||||||| ||||||||| ||| ||||||||||||||| |||| |||||||||    
T  29676281 agaaggcgccacgtgtcccaaaa-aaggggccataatcgcaactttttataaagataaggggtcaaaa 29676215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 311
Target Start/End: Complemental strand, 39386576 - 39386510
Alignment:
Q  246 aagagcttatttc-ctaaagatggagagttaaaagagcatatttctataaagttagagggtcaaaag 311  Q
    ||||||||||||  |||||||||||| || |||| | ||||||||| ||||||||||||||||||||    
T  39386576 aagagcttatttgtctaaagatggagggtcaaaatatcatatttctgtaaagttagagggtcaaaag 39386510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 19078021 - 19078093
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  19078021 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 19078093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 19125911 - 19125983
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  19125911 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 19125983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 24196469 - 24196397
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| | | |||||||||| |||| |||| |||||||||    
T  24196469 ttgctgagaagacgccacgtgtcccaaaa-aaggggccatattcgcaactttttgtaaagataaggggtcaaaa 24196397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 24750006 - 24749934
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    |||||||||||||||||||||  |||||| || |||||| ||| |||||||||| |||| |||| |||||||||    
T  24750006 ttgctaagaagacgccacgtgttccaaaa-aatgggccataatcgcaactttttgtaaagataaggggtcaaaa 24749934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 48471959 - 48472031
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||| ||| ||| |||||||||| |||| |||| |||||||||    
T  48471959 ttgctgagaagacgccacgtgtcccaaaa-aagggaccataatcgcaactttttgtaaagataaggggtcaaaa 48472031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 16551739 - 16551813
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaaga 249  Q
    ||||| ||||||||||||||| |||||||||| |||||| ||| ||||||||||   || |||| |||||||||||    
T  16551739 ttgctgagaagacgccacgtgtcccaaaacaa-gggccataatcgcaactttttgagaagataaggggtcaaaaga 16551813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 43706947 - 43706899
Alignment:
Q  85 cacttttcgccacctaattttaataaaatgttgcgattttggccccctatt 135  Q
    ||||||| ||| |||||||||  ||||||||||||||||||||||||||||    
T  43706947 cactttttgccccctaatttt--taaaatgttgcgattttggccccctatt 43706899  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 4059618 - 4059690
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| || || ||| ||| |||||||||| |||| |||| |||||||||    
T  4059618 ttgctgagaagacgccacgtgtcccaaaa-aatggaccataatcgcaactttttgtaaagataaggggtcaaaa 4059690  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 28920752 - 28920825
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||||||||| || ||||||| | ||||||| ||| || ||||||| |||| |||| |||||||||    
T  28920752 ttgctgagaagacgccacatgtcccaaaaaagggggccataatcgccactttttgtaaagataaggggtcaaaa 28920825  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 6285358 - 6285434
Alignment:
Q  229 taaatataaagggtcaaaagagcttatttcc-taaagatggagagttaaaagagcatatttctataaagttagaggg 304  Q
    |||||||| |||||||||||||| ||||| | ||||| | ||| || |||||||||||||| | ||||| |||||||    
T  6285358 taaatatagagggtcaaaagagcatattttcataaagttagagggtcaaaagagcatatttttctaaagatagaggg 6285434  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 16972164 - 16972096
Alignment:
Q  64 attaaaatgtagactaaattacacttttcgccacctaattttaataaaatgttgcgattttggccccctatt 135  Q
    |||||||| ||| ||||| | ||||||||||| ||||| |||  ||||||||||||||||| ||||||||||    
T  16972164 attaaaat-taggctaaactgcacttttcgccccctaagttt--taaaatgttgcgattttagccccctatt 16972096  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 29365535 - 29365416
Alignment:
Q  147 aattttatctcttaattttacaaaacgttgctaag--------aagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaa 238  Q
    ||||||||| ||||||||||||||||||||| |||        ||||||||| |||  ||||| |  |||||||||||||||||||||| |||| |||||    
T  29365535 aattttatcccttaattttacaaaacgttgcaaagctgctgagaagacgccatgtgtgccaaagcggggggccaaaattgcaactttttgtaaagataaa 29365436  T
Q  239 gggtcaaaagagcttatttc 258  Q
    ||| ||||||||||||||||    
T  29365435 gggccaaaagagcttatttc 29365416  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 35102587 - 35102659
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  35102587 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 35102659  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 11661016 - 11661131
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttatttcc-taaagatggagagt 273  Q
    |||| ||||||| |||| || ||||||| ||||||||||||| |||||||||| |||| |||| |||  |||||||| ||||||| ||||||| ||| |     
T  11661016 tgcttagaagacaccacatgtcccaaaataaggggccaaaatcgcaactttttgtaaagataagggggaaaaagagcatatttccttaaagatagagggg 11661115  T
Q  274 taaaagagcatatttc 289  Q
    || |||| ||||||||    
T  11661116 tacaagaacatatttc 11661131  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Original strand, 20863824 - 20863918
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagc-ttatttcctaaagatgg 268  Q
    ||||| ||||||||||| ||| ||||||| ||||||||| ||| |||||||||| |||| |||| ||||||||||||| | |||||||||| ||||    
T  20863824 ttgctgagaagacgccatgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaagagcataatttcctaaacatgg 20863918  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 34834133 - 34834061
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||||| |||||||| |||| |||| |||||||||    
T  34834133 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataattgtaactttttgtaaagataacgggtcaaaa 34834061  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 4597509 - 4597573
Alignment:
Q  182 aagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    |||||||||| || ||||||| ||||||||| |||||||||||||| |||| |||| |||||||||    
T  4597509 aagacgccacatgtcccaaaa-aaggggccataattgcaactttttgtaaagataaggggtcaaaa 4597573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 25819892 - 25819820
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  25819892 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 25819820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 24051210 - 24051144
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||| || || ||| |||||||||| ||||||||| |||||||||    
T  24051210 agaagacgccacgtgtcccaaaa-aagaggtcataatcgcaactttttgtaaatataaggggtcaaaa 24051144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 9620579 - 9620513
Alignment:
Q  223 tttttataaatataaagggtcaaaagagcttatttc-ctaaagatggagagttaaaagagcatattt 288  Q
    ||||| |||| |||| ||| |||||||||||||||| |||||||| |||| | ||||||||||||||    
T  9620579 tttttgtaaaaataaggggccaaaagagcttatttctctaaagatagagaatcaaaagagcatattt 9620513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 14572274 - 14572346
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| |||||| ||||| || ||||||| ||||| ||| ||| ||||||||||||||| |||| |||||||||    
T  14572274 ttgctgagaagatgccacatgtcccaaaaaaaggg-ccataatcgcaactttttataaagataaggggtcaaaa 14572346  T

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Target: scaffold0025 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 19490 - 19418
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| ||| |||||||||| |||| |||| |||||||||    
T  19490 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcgcaactttttgtaaagataaggggtcaaaa 19418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 62018 - 61950
Alignment:
Q  180 agaagacgccacgtgacccaaaacaa-ggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| || ||||||| |||||||||||||| |||| |||| |||||||||    
T  62018 agaagacgccacgtgtcccaaaaaaaaggggccataattgcaactttttgtaaagataaggggtcaaaa 61950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 311
Target Start/End: Complemental strand, 36013 - 35883
Alignment:
Q  175 tgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt-cctaaagatggagagt 273  Q
    |||| |||||||||||| || ||||||||| |||| ||| |||| |||||||| |||  ||||||||       ||||||||| |||||||||  ||  |    
T  36013 tgctgagaagacgccacatgccccaaaacagggggtcaacattgtaactttttgtaatgataaaggg-------agcttattttcctaaagataaaggat 35921  T
Q  274 taaaagagcatatttctataaagttagagggtcaaaag 311  Q
    |||||||| ||||||| ||||||||||||| |||||||    
T  35920 taaaagagtatatttccataaagttagaggatcaaaag 35883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 2145 - 2217
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| |||||| || ||| |||||||||| |||| |||| |||||||||    
T  2145 ttgctgagaagacgccacgtgtcccaaaa-aaggggtcataatcgcaactttttgtaaagataaggggtcaaaa 2217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 250614 - 250686
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||  ||||||||| |||| |||| |||||||||    
T  250614 ttgctgagaagacgccacgtgccccaaaa-aaggggccataatcacaactttttgtaaagataaggggtcaaaa 250686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 3062 - 3128
Alignment:
Q  180 agaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||||||||||||| ||||||| ||| ||||| |||||||||||||| |||| ||||  ||||||||    
T  3062 agaagacgccacgtgtcccaaaa-aagaggccataattgcaactttttgtaaagataagaggtcaaaa 3128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 881 - 934
Alignment:
Q  204 aaggggccaaaattgcaactttttataaatataaagggtcaaaagagcttattt 257  Q
    |||||| || |||||||||||||| |||| |||| ||||||||||||| |||||    
T  881 aaggggtcataattgcaactttttgtaaagataaggggtcaaaagagcatattt 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 2199 - 2127
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||| | ||| |||||||||| |||| |||  |||||||||    
T  2199 ttgctgagaagacgccacgtgtcccaaaa-aaggggctataatcgcaactttttgtaaagatatggggtcaaaa 2127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 25060 - 25132
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||  ||||||||  |||| |||| |||||||||    
T  25060 ttgctgagaagacgccacgtgtcccaaaa-aaggggccataatcacaacttttgttaaagataaggggtcaaaa 25132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 142043 - 142115
Alignment:
Q  174 ttgctaagaagacgccacgtgacccaaaacaaggggccaaaattgcaactttttataaatataaagggtcaaaa 247  Q
    ||||| ||||||||||||||| ||||||| || |||||| ||| |||||||||| |||| ||||  ||||||||    
T  142043 ttgcttagaagacgccacgtgtcccaaaa-aatgggccataatcgcaactttttgtaaagataagaggtcaaaa 142115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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