View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7918_low_5 (Length: 273)
Name: NF7918_low_5
Description: NF7918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7918_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 52887937 - 52887854
Alignment:
| Q |
12 |
gcagagagtaaagaaaggaaattggagttgcccgaggagaaaggaaagtacagtgaagaaaggagggtggccaatgaattgaag |
95 |
Q |
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| T |
52887937 |
gcagagagtaaagaaaggaaattggagttgcccgaggagaaaggaaagtacagtgaagaaaggagggtggccaatgaattgaag |
52887854 |
T |
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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 52887791 - 52887719
Alignment:
| Q |
171 |
ggtcacgggagaaggaagataaaaggaaaaggtccgttgagagagtgtgtagatataggcaagactgacatat |
243 |
Q |
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| T |
52887791 |
ggtcacgggagaaggaagataaaaggaaaaggtccgttgagagagtgtgtagatataggcaagactgacatat |
52887719 |
T |
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