View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7919_high_1 (Length: 720)
Name: NF7919_high_1
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7919_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 707
Target Start/End: Complemental strand, 10413161 - 10412449
Alignment:
| Q |
1 |
ttgcttgagaaaacattatatgaaatgtttgtttcgaagtgtttgtgtgtgttagtatcttccatcctttttggtgcaacttcagtaaccaatccatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10413161 |
ttgcttgagaaaacattatatgaaatgtttgtttcgaagtgtttgtgtgtgttagtatcttccatcctttttggtgcaactttagtaaccaatccatttt |
10413062 |
T |
|
| Q |
101 |
agcgatctcaatttcatccaactcttttgtctgaatttgaactcaaaacctctaactccttatccattagctcaaaccagttggaatattttatccctgt |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| | |
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| T |
10413061 |
agcgatctcaattttatccaactcttttgtctgaatttgaactcagaacctctaactccttatccattagctcaaaccagttgggatattctatccctat |
10412962 |
T |
|
| Q |
201 |
gagtcaaacactaaatgcgaatatctcttgcagtccatcgaaattcaaacattgacaatgacaaatttaatctattccgctagacacaactcttattgat |
300 |
Q |
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||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
10412961 |
gagtcaaacactaaatgtgaatatctctttcggtccatcgaaattcaaatattgacaa------atttaatctattccgctagacacaactcttattggt |
10412868 |
T |
|
| Q |
301 |
cttaaaatattgctaatttataaaggatatacttatttatgtattcgcaacatgtctttatttctgatttatgtaccttaatttaaaaagtacttagcta |
400 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10412867 |
cttaaaatattgctaatttataaaggatata----tttatgtattcgcaacatgtctttatttctgatttatgtaccttaatttaaaaagtacttagcta |
10412772 |
T |
|
| Q |
401 |
gctataagacaagtaattcaaacaggtaagccttttttaaaaaagtgtatttccttaattttctagtaacgaaatatcataagcatgacatttcgtttga |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10412771 |
gctataagacaagtaattcaaacaggtaagcctttttttaaaaagtgtatttccttaattttctagtaacgaaatatcataagcatgacatttcgtttga |
10412672 |
T |
|
| Q |
501 |
ccata------------ttgaattgatcgaatacaaccatatgag----tatatatatgtcacgttccatccagaacttcctccaattgccaagtagttc |
584 |
Q |
| |
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||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10412671 |
ccatatcatatacacctttgaattgatcgaatacaaccataacagtatatatatatatgtcacgttccatccagaacttcctccaattgccaagtagttc |
10412572 |
T |
|
| Q |
585 |
gttaactccaaggttaatataatctataacatttcttatctttctttattaaattaaacatgacataattaattaaggctacatcctattcctatcactt |
684 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
10412571 |
gttaactccaaggttaatataacctataacatttcttatctttctttattaaattaaacatgacataattaattaaggttacatcctattcctatcactt |
10412472 |
T |
|
| Q |
685 |
ctaatggccgtccacacaaaaat |
707 |
Q |
| |
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||||||||| ||||||||||||| |
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|
| T |
10412471 |
ctaatggccttccacacaaaaat |
10412449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 6296920 - 6296867
Alignment:
| Q |
126 |
tttgtctgaatttgaactcaaaacctctaactccttatccattagctcaaacca |
179 |
Q |
| |
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|||||||| ||||||| || |||||| |||||||||||| ||||||||||||| |
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| T |
6296920 |
tttgtctgggtttgaacccagaacctccaactccttatcccttagctcaaacca |
6296867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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