View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7919_high_3 (Length: 543)
Name: NF7919_high_3
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7919_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 40505118 - 40505625
Alignment:
| Q |
18 |
tataggaagcaagagataatcaagcaatcaaaaggtcaaaatgcaccaccaagccatgtgaaagacaacaaattacacttacaatgaatacaatgaatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40505118 |
tataggaagcaagagataatcaagcaatcaaaaggtcaaaatgcaccaccaagccatgtgaaagacaacaaattacacttacaatgaatacaatgaatta |
40505217 |
T |
|
| Q |
118 |
agtaaaaagtcaggctcttattttttgcaagctcttacatatcataaaaagaaatattgcaatgcaaggacaaagctttggttttgttgtacctgttcag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40505218 |
agtaaaaagtcaggctcttattttttgcaagctcttacatatcataaaaagaaatattgcaatgcaaggacaaagctttggttttgttgtacctgttcag |
40505317 |
T |
|
| Q |
218 |
tttgatcttcaacattatcagaaacgaactttcctgtctgcattaaagaacaaaacacattaatatcatcacaacacaaccagatgaagctggcatttga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40505318 |
tttgatcttcaacattatcagaaacgaacttccctgtctgcattaaagaacaaaacacattaatatcatcacaacacaaccagatgaagctggcatttga |
40505417 |
T |
|
| Q |
318 |
atttgttgcagtaaacaattccacacattcctgcatcaacacatcaatagtcgttagattgagatcgcactgtccaaattttaagctcggtagtttagnn |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40505418 |
atttgttgcagtaaacaattccacacattcccgcatcaacacatcaatagtcgttagattgagatcgcactgtccaaattttaagctcggtagtttagtt |
40505517 |
T |
|
| Q |
418 |
nnnnnaaatcaaaatatgcattgaaatttggatcgtccaatctcaatcttgcaaccatccatgtgttgactacgtgaatgtgtggattgctcaccatagc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40505518 |
tttttaaatcaaaatatgcattgaaatttggatcgtccaatctcaatcttgcaaccatccatgtgttgactacgtgaatgtgtggattgctcaccatagc |
40505617 |
T |
|
| Q |
518 |
aaatctaa |
525 |
Q |
| |
|
|||||||| |
|
|
| T |
40505618 |
aaatctaa |
40505625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 20482900 - 20482968
Alignment:
| Q |
207 |
tacctgttcagtttgatcttcaacattatcagaaacgaactttcctgtctgcattaaagaacaaaacac |
275 |
Q |
| |
|
|||||| ||||| ||||||||||||| || || || ||||| ||||||||||||| |||||||||||| |
|
|
| T |
20482900 |
tacctgctcagtctgatcttcaacatcttccgagacaaacttccctgtctgcattagagaacaaaacac |
20482968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 460
Target Start/End: Complemental strand, 17530671 - 17530634
Alignment:
| Q |
423 |
aaatcaaaatatgcattgaaatttggatcgtccaatct |
460 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
17530671 |
aaatcaaaatatgcattgaagtttggatcatccaatct |
17530634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University