View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7919_low_1 (Length: 876)

Name: NF7919_low_1
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7919_low_1
NF7919_low_1
[»] chr2 (6 HSPs)
chr2 (557-863)||(1193035-1193341)
chr2 (337-514)||(1192737-1192910)
chr2 (18-141)||(1192450-1192570)
chr2 (229-311)||(1192658-1192740)
chr2 (514-562)||(1192959-1193007)
chr2 (18-110)||(1315248-1315341)
[»] chr3 (2 HSPs)
chr3 (688-854)||(17543248-17543413)
chr3 (557-642)||(17543424-17543506)
[»] chr7 (1 HSPs)
chr7 (669-744)||(12932322-12932394)
[»] chr6 (1 HSPs)
chr6 (669-744)||(32450871-32450942)
[»] chr4 (2 HSPs)
chr4 (557-601)||(52016309-52016353)
chr4 (669-731)||(52016413-52016472)
[»] chr1 (2 HSPs)
chr1 (340-374)||(18474795-18474829)
chr1 (397-438)||(18474712-18474753)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 557 - 863
Target Start/End: Original strand, 1193035 - 1193341
Alignment:
Q  557 cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttatggaaaataattactttctcctctcttcctgcacgttttaatttt 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1193035 cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttaaggaaaataattactttctcctctcttcctgcacgttttaatttt 1193134  T
Q  657 acaaacattatcaaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccacattgttgcctta 756  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1193135 acaaacattatcaaggaaagctcttcaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccaccttgttgcctta 1193234  T
Q  757 acctcatactataatttgaataggagaatggtcctttcccatttttggtacatgcacgtcccctctttcctttgacatatgaacacaatcccttcttcat 856  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  1193235 accccatactataatttgaataggagaatggtcctttcccatttttggtacatgcacgtcccctcttttctttgacatatgaatacaatcccttcttcat 1193334  T
Q  857 ccatatt 863  Q
    |||||||    
T  1193335 ccatatt 1193341  T

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Target: chr2; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 337 - 514
Target Start/End: Original strand, 1192737 - 1192910
Alignment:
Q  337 tagttagtggttagttatgtataccatgatttaagctatatcacatagtgactaactcctataaacttgattttccttatttttctctagaataacccat 436  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||    
T  1192737 tagttagtggttagttatgtataccatgatttaagctatatcacacagtgactaacccctataaacttgattttccttatttttctttagaataacctat 1192836  T
Q  437 tccttattttcttcagtatctatctatgatttccactactcctttatttccatatctctctcccctggtatgtttcaa 514  Q
    |||||||||||||| |    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  1192837 tccttattttcttcgg----tatctatgatttccactactcctttatttccattactctctcccctggtatgtttcaa 1192910  T

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Target: chr2; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 1192450 - 1192570
Alignment:
Q  18 gtatctacaaaatattgatgcatacagttagtgaaaaatttgtaatcttaaaatttataaaaattagtatagaaaagtttacttaccataacaacactca 117  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  1192450 gtatctacaaaatattgatgcatacagttaatgaaaaatttgtaatattaaaatttataaaaattagtatagaaaagtttacttaccat---aacactca 1192546  T
Q  118 gcggagccgcaaagtgtaacaccc 141  Q
    ||||||||||||||||||||||||    
T  1192547 gcggagccgcaaagtgtaacaccc 1192570  T

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Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 229 - 311
Target Start/End: Original strand, 1192658 - 1192740
Alignment:
Q  229 gtaatactttcatatatgtcttttattgcacgttgatgccgtggtataatgagtaatacttggtgaaattgaacgggtctagt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1192658 gtaatactttcatatatgtcttttattgcacgttgatgccgtggtataatgagtaatacttggtcaaattgaacgggtctagt 1192740  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 562
Target Start/End: Original strand, 1192959 - 1193007
Alignment:
Q  514 aaacacatatatataacagtataacacgccatattccctctctcataat 562  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1192959 aaacacatatatataacagtataacacgccatattccctctctcataat 1193007  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 1315341 - 1315248
Alignment:
Q  18 gtatctacaaaatattgatgcatacagttagtgaaaaatttgtaatcttaaaattt-ataaaaattagtatagaaaagtttacttaccataaca 110  Q
    |||||| ||||||| |||| |||| | |||||| |||||||||||| ||| ||||| |||||||||| ||||||||| || |||||||||||||    
T  1315341 gtatctgcaaaataatgatacataaaattagtggaaaatttgtaatattataattttataaaaattattatagaaaaattgacttaccataaca 1315248  T

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Target: chr3 (Bit Score: 63; Significance: 6e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 688 - 854
Target Start/End: Complemental strand, 17543413 - 17543248
Alignment:
Q  688 tgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccacattgttgccttaacctcatactataatttgaataggagaatgg 787  Q
    |||||||| || ||||| ||||| || ||||||| |||||||||||||||||| ||| || ||||||||||| ||||| || || ||||||| ||||||     
T  17543413 tgttattcaataaccatacatctttg-tcttcaaagaatcatcaacaacaatttcactttattgccttaaccccataccatgatatgaatagaagaatga 17543315  T
Q  788 tcctttcccatttttggtacatgcacgtcccctctttcctttgacatatgaacacaatcccttcttc 854  Q
     |||||| ||| ||| || |||| |||||  ||||||||||| ||||||||| ||||||||||||||    
T  17543314 acctttctcatgttttgtgcatgaacgtcgtctctttcctttaacatatgaatacaatcccttcttc 17543248  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 642
Target Start/End: Complemental strand, 17543506 - 17543424
Alignment:
Q  557 cataatccttctttaatgattccaaacaaaatctgatttttctccctttcatttatggaaaataattactttctcctctcttcctg 642  Q
    |||||||||||||||||| ||||||||| ||||||||||||    || ||||||| |||||| ||||||||||| |||||||||||    
T  17543506 cataatccttctttaatgcttccaaacagaatctgattttt---tctctcatttaaggaaaagaattactttcttctctcttcctg 17543424  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 669 - 744
Target Start/End: Complemental strand, 12932394 - 12932322
Alignment:
Q  669 aaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccac 744  Q
    |||||||||||||||||||| ||   | |||||||| ||||| ||||||||||||||| |||||||| ||||||||    
T  12932394 aaggaaagctcttgaatgttttt---caattaccatacatctttggtcttcaaggaattatcaacaataattccac 12932322  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 669 - 744
Target Start/End: Complemental strand, 32450942 - 32450871
Alignment:
Q  669 aaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatcaacaacaattccac 744  Q
    ||||||||||||||||||||    ||| || ||||| ||||| ||||||||||||||| |||||||| ||||||||    
T  32450942 aaggaaagctcttgaatgtt----ttcaatcaccatacatctttggtcttcaaggaattatcaacaataattccac 32450871  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 557 - 601
Target Start/End: Original strand, 52016309 - 52016353
Alignment:
Q  557 cataatccttctttaatgattccaaacaaaatctgatttttctcc 601  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||    
T  52016309 cataatcattccttaatgattccaaacaaaatctgattttcctcc 52016353  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 669 - 731
Target Start/End: Original strand, 52016413 - 52016472
Alignment:
Q  669 aaggaaagctcttgaatgttgttattccattaccatgcatctctggtcttcaaggaatcatca 731  Q
    ||||||||||||||||||||   |||| |||||||| ||||| | ||||||||||||||||||    
T  52016413 aaggaaagctcttgaatgtt---attcaattaccatacatctttagtcttcaaggaatcatca 52016472  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 340 - 374
Target Start/End: Complemental strand, 18474829 - 18474795
Alignment:
Q  340 ttagtggttagttatgtataccatgatttaagcta 374  Q
    ||||||||||||||| |||||||||||||||||||    
T  18474829 ttagtggttagttatatataccatgatttaagcta 18474795  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 18474753 - 18474712
Alignment:
Q  397 ataaacttgattttccttatttttctctagaataacccattc 438  Q
    ||||||||| | ||||||||||||||||||||||||| ||||    
T  18474753 ataaacttggtcttccttatttttctctagaataacctattc 18474712  T

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