View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7919_low_3 (Length: 584)
Name: NF7919_low_3
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7919_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 21 - 574
Target Start/End: Original strand, 10378636 - 10379189
Alignment:
| Q |
21 |
tccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataa |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378636 |
tccggaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataa |
10378735 |
T |
|
| Q |
121 |
ctcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagcca |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378736 |
ctcagactcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagcca |
10378835 |
T |
|
| Q |
221 |
tcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378836 |
tcaacaactgaaccatccaaaatcaactacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttga |
10378935 |
T |
|
| Q |
321 |
attgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactag |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10378936 |
attgtcttccatttgaaagtctcaagaatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataaaggatactag |
10379035 |
T |
|
| Q |
421 |
atgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgcacttgatctctgttgt |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10379036 |
atgccaaaatctatggttgtttgtgtttggtgctctcatacaacccttttctgatttagattatcatgttaacatgatacatgcacttgatctctgttgt |
10379135 |
T |
|
| Q |
521 |
gtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttctctg |
574 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10379136 |
gtcaatggcatagtatagatgctgacattctcaaaggaaggtccatgttctctg |
10379189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 247 - 410
Target Start/End: Original strand, 10367337 - 10367500
Alignment:
| Q |
247 |
ctacactaaggaatgtgttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaag |
346 |
Q |
| |
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|||||| |||||||| ||||||||| |||| | | |||||||||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
10367337 |
ctacacaaaggaatgcgttgaagtagagtctggactctttcttcttcctgatgacattcttgaattgtgtttggatcgtcttccattcgaaggtctcaag |
10367436 |
T |
|
| Q |
347 |
aatgttaggcttgcttgcaagaattggagttccttccttactaccgagagaatccttcaaataa |
410 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
10367437 |
aatgttaggcttgtttgcaagaattggagttccttccttaccactgagagaatccttcaaataa |
10367500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 31329248 - 31329456
Alignment:
| Q |
25 |
gaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactca |
124 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |||||||||| |||||||||| |||||||||| | |
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| T |
31329248 |
gaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatggaaaattccagagccaacacaaatccaaataact-a |
31329345 |
T |
|
| Q |
125 |
gac---tcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccat |
221 |
Q |
| |
|
||| |||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| ||| ||||||| | |||||||||||| ||||||| |
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| T |
31329346 |
gacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgatattcatgaaaaatactaccacaagcagctaagccat |
31329444 |
T |
|
| Q |
222 |
caacaactgaacca |
235 |
Q |
| |
|
|||||||||||| |
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|
| T |
31329445 |
--acaactgaacca |
31329456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 31335969 - 31336177
Alignment:
| Q |
25 |
gaaagcctgcaaagcactctgggagtccctctccaccaaaagatgacgcagatggtgttgaatggcaaattccagaaccaacacaaagccaaataactca |
124 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||| | ||||| |||||||||| |||||||||| |||||||||| | |
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| T |
31335969 |
gaaagcctgcaaagcactccaggagtccc-ctccaccctaagatgccgccaatggtacttaatggaaaattccagagccaacacaaatccaaataact-a |
31336066 |
T |
|
| Q |
125 |
gac---tcaaaaactgatttttgacccaaattgtaagaaaaacaacccaaaaaagatcctcgataatcacgaaaaatgccaccacaagcagccaagccat |
221 |
Q |
| |
|
||| |||||||| || ||||||||||| ||| |||||||||||||||||||| |||||||||| ||| ||||||| | |||||||||||| ||||||| |
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| T |
31336067 |
gacctctcaaaaaccgaattttgacccaagttgcaagaaaaacaacccaaaaaa-atcctcgatattcatgaaaaatactaccacaagcagctaagccat |
31336165 |
T |
|
| Q |
222 |
caacaactgaacca |
235 |
Q |
| |
|
|||||||||||| |
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|
| T |
31336166 |
--acaactgaacca |
31336177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 381
Target Start/End: Original strand, 43657570 - 43657687
Alignment:
| Q |
264 |
ttgaagtacagtccgaaatctttcttcttcctgatgacattcttgaattgtgtttgaattgtcttccatttgaaagtctcaagaatgttaggcttgcttg |
363 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| ||||||||| |||||||| || || || ||| ||||||||| | |||| |||||||| || |
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| T |
43657570 |
ttgaagtaaagtccgaaatctttcttcttcccgatggtattcttgaaatgtgtttggatcgtgttgcatgcgaaagtctcgataatgctaggcttgtgtg |
43657669 |
T |
|
| Q |
364 |
caagaattggagttcctt |
381 |
Q |
| |
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||| || ||||||||||| |
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|
| T |
43657670 |
caaaaaatggagttcctt |
43657687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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