View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7919_low_6 (Length: 507)
Name: NF7919_low_6
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7919_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Complemental strand, 43051653 - 43051176
Alignment:
| Q |
19 |
agcaatttcacttgatcataatagtaatatgtgcacctcctaatcaaaatctaatcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaat |
118 |
Q |
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| T |
43051653 |
agcaatttcacttgatcataatagtaatatgtgcacctcctaatcaaaatctaatcttcaaatacgcaatgaatgaccaagaatagtttcatgtgggaat |
43051554 |
T |
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| Q |
119 |
gtaatgatgaatatacctgagggaaggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtgatgtccggtgccatc |
218 |
Q |
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| T |
43051553 |
gtaatgatgaatatacctgagggaaggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtggtgtccggtgccatc |
43051454 |
T |
|
| Q |
219 |
aatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgtccttcaaaatttgttccttttttcttcttgttgtttagtgttgttgtaat |
318 |
Q |
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| T |
43051453 |
aatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgtccttcaaaatttgttccttttttcttcttgttgtgtagtgttgttgtaat |
43051354 |
T |
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| Q |
319 |
gtaatg-----tgattgtgaccttcaaatattgtttttaaataagggttggaatggaattggatgatgggtgagtgatgatgcacgctttacctccattc |
413 |
Q |
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| T |
43051353 |
gtaatgtaatatgattgtgaccttcaaatattgtttttaaataagggttggaatggaattggatgatgggtgagtgatgatgcacgctttacctccattc |
43051254 |
T |
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| Q |
414 |
aattgttgccactcatttaccttctccttcattttaggactcaactaactactctctctatttactattcctattctt |
491 |
Q |
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| T |
43051253 |
aattgttgccactcatttaccttctccttcattttaggactcaactaactactctctctatttactattcctattctt |
43051176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 132 - 268
Target Start/End: Original strand, 34173838 - 34173974
Alignment:
| Q |
132 |
tacctgagggaaggaagagctctgagcccaaacagagccatcatggccaatgatggcagcggcagataggtgatgtccggtgccatcaatatcacacatc |
231 |
Q |
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|||||||||||| |||| |||||||||||||||||| || |||||||| | |||||||| || | |||||||| || |||||||| |||||||||||| |
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| T |
34173838 |
tacctgagggaatgaagtgctctgagcccaaacagaaccgtcatggccgagaatggcagccgcggtgaggtgatgaccagtgccatcgatatcacacatc |
34173937 |
T |
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| Q |
232 |
aaatgttcatcaacgtaagtttgccacgacattttgt |
268 |
Q |
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| T |
34173938 |
aaatgttcatccacataagtttgccacgacattttgt |
34173974 |
T |
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