View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7919_low_7 (Length: 498)

Name: NF7919_low_7
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7919_low_7
NF7919_low_7
[»] chr1 (3 HSPs)
chr1 (278-422)||(6444363-6444515)
chr1 (145-250)||(6444259-6444349)
chr1 (428-485)||(6444574-6444632)
[»] scaffold0018 (2 HSPs)
scaffold0018 (20-82)||(137655-137717)
scaffold0018 (20-82)||(146115-146177)
[»] chr8 (3 HSPs)
chr8 (134-229)||(29731252-29731343)
chr8 (136-233)||(6653707-6653800)
chr8 (136-233)||(6734107-6734200)
[»] chr5 (3 HSPs)
chr5 (48-82)||(24895961-24895995)
chr5 (48-82)||(24908193-24908227)
chr5 (48-82)||(24985728-24985762)


Alignment Details
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 6444363 - 6444515
Alignment:
Q  278 tagttcttctgtgtgaaaccagtttgcactgcaatgtccactgtgacatttccaacaaacaaacactgatcgtaggcacatgat----tttctacttaga 373  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||||||||||||    
T  6444363 tagttcttgtgtgtgaaaccagtttgcactgcaatgtccactgtgacatttccaacaaacaaacactgatcgtatgcacatgattttctttctacttaga 6444462  T
Q  374 gagtggtcctgtccttttt----cacacccatgtagtccttgcaatgttccat 422  Q
    ||||||||||||||||| |    ||||| ||||||||||||||||||||||||    
T  6444463 gagtggtcctgtcctttgtcacacacacacatgtagtccttgcaatgttccat 6444515  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 6444259 - 6444349
Alignment:
Q  145 taatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtcacgcaacatgat 244  Q
    |||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  6444259 taatcttagattatttttcacctcctacttggtggcggg---------------ttgagaagaacaggaaaatattattttagtggtcacgcaacatgat 6444343  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 428 - 485
Target Start/End: Original strand, 6444574 - 6444632
Alignment:
Q  428 ccactctgcttcattatattgctgttgag-ttacaccttctcttccctttatctctgct 485  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  6444574 ccactctgcttcattatattgctgttgagtttacaccttctcttccctttatgtctgct 6444632  T

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Target: scaffold0018 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 137655 - 137717
Alignment:
Q  20 cttagagccacaaaggaccaataatataagcataggtgctgtgcttgatttggtttcattaat 82  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  137655 cttagagccacaaaggaccaataatataagtataggtgctgttcttgatttggtttcattaat 137717  T

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Target: scaffold0018; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 146115 - 146177
Alignment:
Q  20 cttagagccacaaaggaccaataatataagcataggtgctgtgcttgatttggtttcattaat 82  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  146115 cttagtgccacaaaggaccaataatataagcataggtgctgtgcttgatttgggttcattaat 146177  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 29731343 - 29731252
Alignment:
Q  134 cataacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtg 229  Q
    |||||||||| ||||| | |||||||| ||||||||| |||||||||||||||||    ||||||||||||||||||| |||||||||||||||||    
T  29731343 cataacacaattaatcatggattatttctcacctcctccttggtggcggggcctg----aatgggttgagaagaacagaaaaatattattttagtg 29731252  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 6653707 - 6653800
Alignment:
Q  136 taacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtca 233  Q
    |||||||| ||||| | |||||||||||||||||| ||| |||||||||||    ||||||||||||||||||| | |||||||||||||| ||||||    
T  6653707 taacacaattaatcatggattatttttcacctcctccttagtggcggggcc----tgaatgggttgagaagaactgaaaaatattattttaatggtca 6653800  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 136 - 233
Target Start/End: Original strand, 6734107 - 6734200
Alignment:
Q  136 taacacaactaatcttagattatttttcacctcctacttggtggcggggcctgaatgaatgggttgagaagaacaggaaaatattattttagtggtca 233  Q
    |||||||| ||||| | |||||||||||||||||| ||| |||||||||||    ||||||||||||||||||| | |||||||||||||| ||||||    
T  6734107 taacacaattaatcatggattatttttcacctcctcctttgtggcggggcc----tgaatgggttgagaagaactgaaaaatattattttaatggtca 6734200  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 24895961 - 24895995
Alignment:
Q  48 agcataggtgctgtgcttgatttggtttcattaat 82  Q
    |||||||||||||||||||||||||||||||||||    
T  24895961 agcataggtgctgtgcttgatttggtttcattaat 24895995  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 24908193 - 24908227
Alignment:
Q  48 agcataggtgctgtgcttgatttggtttcattaat 82  Q
    |||||||||| ||||||||||||||||||||||||    
T  24908193 agcataggtgttgtgcttgatttggtttcattaat 24908227  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 24985728 - 24985762
Alignment:
Q  48 agcataggtgctgtgcttgatttggtttcattaat 82  Q
    |||||||||| ||||||||||||||||||||||||    
T  24985728 agcataggtgttgtgcttgatttggtttcattaat 24985762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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