View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7919_low_8 (Length: 405)
Name: NF7919_low_8
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7919_low_8 |
 | |
|
| [»] scaffold0041 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 390
Target Start/End: Complemental strand, 37286 - 36905
Alignment:
| Q |
15 |
aagaaacataggaaaaccaaaacaaaacagaaatattccatgtatgtgatgtatttaacttcctcaactatcctattctgttgtatctaattctatgatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37286 |
aagaaacataggaaaaccaaaacaaaacagaaatattccatgtatgtgatgtatttaacttcctcaactatcctattctgttgtatctaattctatgatt |
37187 |
T |
|
| Q |
115 |
aattgtaattacttgtatgtgatcatctctaatttttggttataatactttgttacttttgatcctgccgtgcatgcatgccttggaaagcatattggtt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37186 |
aattgtaattacttgtatgtgatcatctctaatttgtggttataatactttgttacttttgatcctgccgtgcatgcatgccttggaaagcatattggct |
37087 |
T |
|
| Q |
215 |
cttgaaattttgttcaacaacagtcgagtcaaatatgatgaatagtaagagttctgccagagatcgaagacttgaaaagttacaagaaattaaatcctta |
314 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37086 |
cttgaagttttgttcaacaacagtcgaatcaaatatgatgaatagtgagagtcctgccagagatcgaagacttgaaaagttacaagaaattaaatcctta |
36987 |
T |
|
| Q |
315 |
aggaatgagtcaatcaaagattggtttggg------ttttggttttacattgcctttccatttatttttgcaaactgttatt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36986 |
aggaatgagtcaatcaaagattggtttgggttctgattttggttttacattgcctttccatttatttttgcaaactgttatt |
36905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 565287 - 565208
Alignment:
| Q |
57 |
tatgtgatgtatttaacttcctcaactatcctattctgttgtatctaattctatgattaattgtaattacttgtatgtga |
136 |
Q |
| |
|
||||||||||||||| |||| |||| || |||| ||||||||||||||||| |||||||| ||| ||| | ||||||| |
|
|
| T |
565287 |
tatgtgatgtatttagtttccacaacagtcttattatgttgtatctaattctaagattaattttaagtacctatatgtga |
565208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University