View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7919_low_9 (Length: 313)
Name: NF7919_low_9
Description: NF7919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7919_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 1228713 - 1228406
Alignment:
| Q |
8 |
gagaagaagcacaaatagtactttatccatcgaaataaatctatttaaatctacatcccaatatat--------------------tctaatgaaaaaat |
87 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1228713 |
gagatgaagcataaatagtactttatccatcgaaataaatctatttaaatctacatcccaatatatatatatatatcccaatatattctaatgaaaaaat |
1228614 |
T |
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| Q |
88 |
ggagaaataaattttttgttaattaaagtgaagaccattttacactaggattttgaactttgtacacgtacaaggttagactcatataactaactatatt |
187 |
Q |
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| T |
1228613 |
ggagaaataaattttttgttaattaaagtgaagaccattttacactaggattttgaactttgtacacgtacaaggttagactcatataactaactatatt |
1228514 |
T |
|
| Q |
188 |
tgaattattatttttatataaacaatgctgcccctttttagtaaaaaggaaaataaatagtgccccttcaaagtcatttccatttttgagttaactggga |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228513 |
tgaattattatttttatataaacaatgctgcccctttttagtaaaaaagaaaataaatagtgccccttcaaagtcatttccatttttgagttaactggga |
1228414 |
T |
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| Q |
288 |
agtaaaaa |
295 |
Q |
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|||||||| |
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| T |
1228413 |
agtaaaaa |
1228406 |
T |
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