View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_high_10 (Length: 410)

Name: NF7920_high_10
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_high_10
NF7920_high_10
[»] chr4 (3 HSPs)
chr4 (24-404)||(50415839-50416206)
chr4 (36-213)||(24236572-24236749)
chr4 (36-101)||(11102838-11102903)
[»] chr2 (2 HSPs)
chr2 (36-405)||(25233195-25233564)
chr2 (324-379)||(11547134-11547189)
[»] chr8 (1 HSPs)
chr8 (75-399)||(26979878-26980202)
[»] chr1 (1 HSPs)
chr1 (256-387)||(40240213-40240344)
[»] chr5 (2 HSPs)
chr5 (97-171)||(31765733-31765807)
chr5 (121-166)||(38161231-38161276)
[»] chr6 (4 HSPs)
chr6 (36-229)||(26179865-26180057)
chr6 (96-160)||(10920506-10920570)
chr6 (99-163)||(32332581-32332645)
chr6 (105-157)||(34179966-34180018)
[»] chr3 (1 HSPs)
chr3 (90-178)||(25389618-25389706)


Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 24 - 404
Target Start/End: Original strand, 50415839 - 50416206
Alignment:
Q  24 gggggtattcagtcaggttacgagattctcactactcaggatcactatgtgctggatgctgctcagaatctaatttggcattctcagatgtcgttgaagg 123  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||            |    
T  50415839 gggggtattcagtcaggttatgagattctcactactcaggatcaccatgtgctggatgctgctcagaatctaatttggcattctcag------------g 50415926  T
Q  124 tgtctattttagcttggcgtttgcttcaggacaggttgccaactaaaataaattttcacagtcggggcattattactgctgcagacatctcttgcgtggc 223  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||  |||||| |    
T  50415927 tgtctattttagcttggcgtttgcttcgggacaggttgccaactaaaataaatcttcacagtcggg-cattattactgttgcagacatcttctgcgtgtc 50416025  T
Q  224 agggtgcggacatgacgaatttgctaatcatttgtttatgcattgtgattttttcggtgctatttggcatcaggtgcggttatggcttggcttttcaaga 323  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50416026 agggtgcggacatgatgaatttgctaatcatttgtttctgcattgtgattttttcggtgctatttggcatcaggtgcggttatggcttggcttttcaaga 50416125  T
Q  324 gttgatcatcaaaatattggcgctcattttcttcacttcacgaattacttaggtggtatgaagactaggcgttcttctctc 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50416126 gttgatcatcaaaatattggcgctcattttcttcacttcacgaattacttaggtggtatgaagactaggcgttcttttctc 50416206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 213
Target Start/End: Original strand, 24236572 - 24236749
Alignment:
Q  36 tcaggttacgagattctcactactcaggatcactatgtgctggatgctgctcagaatctaatttggcattctcagatgtcgttgaaggtgtctattttag 135  Q
    |||||||| || || || ||| ||||||||||  ||| | |||||||||| |||||||| ||||||||| ||||| | ||| |||||||||| |||||||    
T  24236572 tcaggttatgaaatccttacttctcaggatcatcatgcggtggatgctgcccagaatcttatttggcatcctcaggtttcgctgaaggtgtcgattttag 24236671  T
Q  136 cttggcgtttgcttcaggacaggttgccaactaaaataaattttcacagtcggggcattattactgctgcagacatct 213  Q
    |||||||||| ||||  ||||||||||| || ||||| ||  ||| || |||||||||||||| || ||| |||||||    
T  24236672 cttggcgtttacttcgagacaggttgccgacaaaaatcaaccttctcaatcggggcattattattgttgcggacatct 24236749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 101
Target Start/End: Original strand, 11102838 - 11102903
Alignment:
Q  36 tcaggttacgagattctcactactcaggatcactatgtgctggatgctgctcagaatctaatttgg 101  Q
    |||||||| || || || |||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  11102838 tcaggttatgaaatccttactactcaagatcactatgtgttggatgctgctcagagtctaatttgg 11102903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 36 - 405
Target Start/End: Original strand, 25233195 - 25233564
Alignment:
Q  36 tcaggttacgagattctcactactcaggatcactatgtgctggatgctgctcagaatctaatttggcattctcagatgtcgttgaaggtgtctattttag 135  Q
    |||||||| |||||||| |||||  |||||||  || ||| ||||| | | ||||| || ||||||||||||||| |  |  ||||||||||||||||||    
T  25233195 tcaggttatgagattcttactacataggatcaacatatgcgggatgattcacagaaccttatttggcattctcaggtcccagtgaaggtgtctattttag 25233294  T
Q  136 cttggcgtttgcttcaggacaggttgccaactaaaataaattttcacagtcggggcattattactgctgcagacatctcttgcgtggcagggtgcggaca 235  Q
    |||| |||||| |||  || || |||||||||||||||||| ||||  | |||||||||||||||| ||||||||||||||| ||||  || ||||| ||    
T  25233295 cttgacgtttgattcgtgaaagattgccaactaaaataaatcttcagcgacggggcattattactgttgcagacatctcttgtgtggtgggttgcggtca 25233394  T
Q  236 tgacgaatttgctaatcatttgtttatgcattgtgattttttcggtgctatttggcatcaggtgcggttatggcttggcttttcaagagttgatcatcaa 335  Q
    ||| ||||  ||||| ||| ||||| ||||||||||||||| | |  | ||||||||||| |||||||||||||||||||||||| | ||||||||||||    
T  25233395 tgaggaatccgctaaccatctgtttttgcattgtgatttttacagaacgatttggcatcatgtgcggttatggcttggcttttcaggtgttgatcatcaa 25233494  T
Q  336 aatattggcgctcattttcttcacttcacgaattacttaggtggtatgaagactaggcgttcttctctct 405  Q
    ||| |||  |||||||| |||||||||||  |||||||||||||   ||||| |||||| |||| |||||    
T  25233495 aatgttgatgctcatttccttcacttcacacattacttaggtgggtcgaagaataggcgctcttttctct 25233564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 379
Target Start/End: Original strand, 11547134 - 11547189
Alignment:
Q  324 gttgatcatcaaaatattggcgctcattttcttcacttcacgaattacttaggtgg 379  Q
    ||||||||||||| | || | ||||||||||||||||||||  |||||||||||||    
T  11547134 gttgatcatcaaagtcttcgtgctcattttcttcacttcactcattacttaggtgg 11547189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 75 - 399
Target Start/End: Original strand, 26979878 - 26980202
Alignment:
Q  75 ctggatgctgctcagaatctaatttggcattctcagatgtcgttgaaggtgtctattttagcttggcgtttgcttcaggacaggttgccaactaaaata- 173  Q
    ||||||| |||  |||| || ||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||     
T  26979878 ctggatggtgcagagaaactcatttggcatactcaggtgtcgttgaaggtgtttattttagcgtggcgtttgcttcaggacaggttgccaac-aaaatat 26979976  T
Q  174 aattttcacagtcggggcattattactgctgcagacatctcttgcgtggcagggtgcggacatgacgaatttgctaatcatttgtttatgcattgtgatt 273  Q
    ||||||||||  || || |||||||||| ||| ||||||||  ||  ||| |||| |||||| |  |||  |||| ||||| |||||||||||||||||     
T  26979977 aattttcacatccgtggtattattactgatgcggacatctccagcacggcggggtacggacaggtggaaactgctgatcatatgtttatgcattgtgata 26980076  T
Q  274 ttttcggtgctatttggcatcaggtgcggttatggcttggcttttcaagagttgatcatcaaaatattggcgctcattttcttcacttcacgaattactt 373  Q
     || |||| ||||  |||| ||||||| ||| ||||| ||||||||| ||||||||||||||| | |  |||||||||||||||||||||| || |||||    
T  26980077 cttacggttctatccggcagcaggtgcagttttggctaggcttttcaggagttgatcatcaaagtctcagcgctcattttcttcacttcaccaactactt 26980176  T
Q  374 aggtggtatgaagactaggcgttctt 399  Q
    |||||||| || ||||||||||||||    
T  26980177 aggtggtacgaggactaggcgttctt 26980202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 256 - 387
Target Start/End: Complemental strand, 40240344 - 40240213
Alignment:
Q  256 tgtttatgcattgtgattttttcggtgctatttggcatcaggtgcggttatggcttggcttttcaagagttgatcatcaaaatattggcgctcattttct 355  Q
    ||||| |||| ||||||| ||| |||||||| |||||||||||| ||||||||||||| || |||||||||||||  |||||| |||| |||||||||||    
T  40240344 tgtttttgcactgtgattattttggtgctatctggcatcaggtgaggttatggcttggtttctcaagagttgatcggcaaaatgttggtgctcattttct 40240245  T
Q  356 tcacttcacgaattacttaggtggtatgaaga 387  Q
    ||| ||||||||||| ||||||||||||||||    
T  40240244 tcatttcacgaattatttaggtggtatgaaga 40240213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 31765807 - 31765733
Alignment:
Q  97 tttggcattctcagatgtcgttgaaggtgtctattttagcttggcgtttgcttcaggacaggttgccaactaaaa 171  Q
    |||||||||||||| || | |||||||||| ||||||||| |||||||||||||  |||||||||||||| ||||    
T  31765807 tttggcattctcaggtgccattgaaggtgtttattttagcatggcgtttgcttcgagacaggttgccaacaaaaa 31765733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 38161276 - 38161231
Alignment:
Q  121 aggtgtctattttagcttggcgtttgcttcaggacaggttgccaac 166  Q
    ||||||| |||||||||||| | |||||||||||||| ||||||||    
T  38161276 aggtgtcgattttagcttggtgcttgcttcaggacagattgccaac 38161231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 26180057 - 26179865
Alignment:
Q  36 tcaggttacgagattctcactactcaggatcactatgtgctggatgctgctcagaatctaatttggcattctcagatgtcgttgaaggtgtctattttag 135  Q
    |||||||| || || || ||| |||| |||||  ||||| ||||| ||||||||||||| ||||||||| || || |  ||||||||||||| ||||||     
T  26180057 tcaggttatgaaatccttacttctcaagatcatcatgtggtggatactgctcagaatcttatttggcatccttaggttccgttgaaggtgtcgattttaa 26179958  T
Q  136 cttggcgtttgcttcaggacaggttgccaactaaaataaattttcacagtcggggcattattactgctgcagacatctcttgcgtggcagggtg 229  Q
     |||||  |||||||  ||||||||||| |  ||||| ||| |||  | ||| |||||||||| || |||| |||||| ||| ||| |||||||    
T  26179957 tttggcccttgcttcgagacaggttgccgataaaaatcaatcttcttaatcgaggcattattattgttgca-acatcttttgtgtgacagggtg 26179865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Original strand, 10920506 - 10920570
Alignment:
Q  96 atttggcattctcagatgtcgttgaaggtgtctattttagcttggcgtttgcttcaggacaggtt 160  Q
    ||||||||| ||||  ||||||||||||||||||||||||| ||| | ||||||| |||||||||    
T  10920506 atttggcatcctcaagtgtcgttgaaggtgtctattttagcgtggggcttgcttcgggacaggtt 10920570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 32332645 - 32332581
Alignment:
Q  99 tggcattctcagatgtcgttgaaggtgtctattttagcttggcgtttgcttcaggacaggttgcc 163  Q
    |||||| ||||| |||| |||||||| || ||||||||||||||||||||||| || ||||||||    
T  32332645 tggcatactcaggtgtcattgaaggtttccattttagcttggcgtttgcttcatgataggttgcc 32332581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 34180018 - 34179966
Alignment:
Q  105 tctcagatgtcgttgaaggtgtctattttagcttggcgtttgcttcaggacag 157  Q
    |||||| || |||| || ||||||||||||||||||||| |||||||||||||    
T  34180018 tctcaggtgccgttaaaagtgtctattttagcttggcgtctgcttcaggacag 34179966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 25389618 - 25389706
Alignment:
Q  90 aatctaatttggcattctcagatgtcgttgaaggtgtctattttagcttggcgtttgcttcaggacaggttgccaactaaaataaattt 178  Q
    ||||| || |||||||||||| || | |||||||| || ||  |||||||||||||| |||| |||||||| || || ||||| |||||    
T  25389618 aatctgatatggcattctcagttgccattgaaggtctccatcctagcttggcgtttgattcatgacaggtttccgacaaaaattaattt 25389706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University