View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_high_11 (Length: 408)
Name: NF7920_high_11
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 2283276 - 2282885
Alignment:
| Q |
1 |
gagtcaagatttgaatatgaaaaactctacttattcatcttaaaaaaggtcaatttacagccaatagacaactcaatnnnnnnnnn--cattttagaacc |
98 |
Q |
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| T |
2283276 |
gagtcaagatttgaatatgaaaaactctacttattcatcttaaaaaaggtcaatttacagccaatagacaactcaataaaaaaaaaaacattttagaacc |
2283177 |
T |
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| Q |
99 |
aaaatgattcttgaatcattgtgattataaccaacattgtttaagatgtttagtgatgtagagatgtaacttaccatcaatgagtgattgggagacatgg |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2283176 |
aaaatgattcttgaatcattgtgattataaccaacattgtttaagatgtttagtgatgtagagatgtaacttaccatcaatgagtgattgggagacatgg |
2283077 |
T |
|
| Q |
199 |
aaggtggaacataagagcagggacagaaacaagaagacattcatggtggttgagctatgaaagttactgctcttcattcaagtttgagaggaggatatgg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
2283076 |
aaggtggaacataagagcagggacagaaacaagaagacattcatggtggttgagctatgaaagttactactcttcattcaagtttgagaagaggatatgg |
2282977 |
T |
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| Q |
299 |
tatggggaaagaagaaggcgcgagaatgaaatggacttagcaagcaatgttacagggtacaggatgggcatgtccttatatgcatgctttct |
390 |
Q |
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| T |
2282976 |
tatggggaaagaagaaggcgcgagaatgaaatggacttagcaagcaatgttacagggtacaggatgggcatgtccttatatgcatgctttct |
2282885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 26193469 - 26193501
Alignment:
| Q |
24 |
actctacttattcatcttaaaaaaggtcaattt |
56 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
26193469 |
actctacttattcatcttaaaaaaggtgaattt |
26193501 |
T |
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