View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_high_16 (Length: 372)
Name: NF7920_high_16
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 42820966 - 42820604
Alignment:
| Q |
14 |
atatattactatcatagttccatctcctagaaagagatgggttaaaaacaaa-------------------taacttgagatgctaatcctttattcctc |
94 |
Q |
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| T |
42820966 |
atatattactatcatagttccatctcctagaaagagatgggttaaaaacaaaataaaaagccaatgacaaataacttgagatgctaatcctttattcctc |
42820867 |
T |
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| Q |
95 |
ctaattaatcggtgacatcaattaattagcaatgattagtgaatgcgtgcatagaaagtttatcacccaaaatattactgtactaatattacagcatgca |
194 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42820866 |
ctaattaatcggtgacatcaattaattaccaatgattagtgaatgcgtgcatagaaagtttatcacacaaaatattactgtactaatattacagcatgca |
42820767 |
T |
|
| Q |
195 |
gtgggtgtgacctgttgatgtcatctgtggctatttctgagaagcaaaagccattgatcacaatcacaaatattccagcaagcagggggtcaccaatatt |
294 |
Q |
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| T |
42820766 |
gggggtgtgacctgttgatgtcatctgtggctatttctgagaagcaaaagccattgatcacaatcacaaatattccagcaagcagggggtcaccaatatt |
42820667 |
T |
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| Q |
295 |
tgatgttacttgtggccagttctaaatagcaagagccaattcaggtcaacttatcattctatt |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42820666 |
tgatgttacttgtggccagttctaaatagcaagagccaattcaggtcaacttatcattctatt |
42820604 |
T |
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