View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_high_18 (Length: 311)
Name: NF7920_high_18
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 21851097 - 21850808
Alignment:
| Q |
1 |
ctatatatagaggaatgaaaggacgtagttgtatgaatatttgtatagaatataatgtaatattcaaatagaagtcttgttcaaaaaatattcaaattga |
100 |
Q |
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| T |
21851097 |
ctatatatagaggaatgaaaggacgtagttgtatgaatatttggatagaatataatgtaatattcaaatagaagtcttgttcaaaaaatattcaaattga |
21850998 |
T |
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| Q |
101 |
agatgatgaactcaacattgttgtcattgaaatataatagtagttagaacaactttagagtggtgtcaaagacatcctattttgtttatcaccttcttgt |
200 |
Q |
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| T |
21850997 |
agatga---actcaacattgttgacattgaactataatagtagttggaacaactttagagtggtgtcaaagacatcctattttgtttatcaccttcttgt |
21850901 |
T |
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| Q |
201 |
gcaagtcaaaattccttaataatttttatactattattatgattattagttatagttttaaatctctttcattgtgtatataagggtgcattt |
293 |
Q |
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| T |
21850900 |
gcaagtcaaaattccttaataatttttatactattattatgattattagttatagttttaattctctttcattgtgtatataagggtgcattt |
21850808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 21181083 - 21180980
Alignment:
| Q |
108 |
gaactcaacattgttgtcattgaaatataatagtagttagaacaactttagagtggtgtcaaagacatcctattttg-tttatcaccttcttgtgcaagt |
206 |
Q |
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||||| |||||| |||||||||| | | |||||||||||||||||||||||| ||||||||||||||| |||| | |||||| ||||||||| |||| |
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| T |
21181083 |
gaactaaacattactgtcattgaacaagactagtagttagaacaactttagagtagtgtcaaagacatccaatttagttttatctccttcttgtctaagt |
21180984 |
T |
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| Q |
207 |
caaa |
210 |
Q |
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|||| |
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| T |
21180983 |
caaa |
21180980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 21197123 - 21197079
Alignment:
| Q |
143 |
gttagaacaactttagagtggtgtcaaagacatcctattttgttt |
187 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
21197123 |
gttagaacaactttagagtggtgtcaaagacattcaattttgttt |
21197079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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