View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_high_2 (Length: 599)
Name: NF7920_high_2
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 24692012 - 24691423
Alignment:
| Q |
1 |
caaatttcttttaaaaagaggactggagcgagtaccatatttgttaatttatgtgtattttccaaatgtgtgtttgttgtagaagataaaaagtagaaga |
100 |
Q |
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||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24692012 |
caaatttcttttaaaaataggaccggaacgagtaccatatttgttaatttatgtgtattttccaaatgtgtgtttgttgtagaagataaaaagtagaaga |
24691913 |
T |
|
| Q |
101 |
gagatagatagaaacataaacaaagtgtcactttgagatgtctatattttgattttcaaataacacaagaaatgttcaagacttcaactattttgggtca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24691912 |
gagatagatagaaacataaacaaagtgtcactt-gagatgtctatattttgattttcaaataacacaagagatgttcaagacttcaactattttgggtca |
24691814 |
T |
|
| Q |
201 |
aaa---gatgttataaatttgtgctatgtgatgtgagattgttttgatcttgtacaataaagcttgagagcatgatgagtagtattttgctttttgaata |
297 |
Q |
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| T |
24691813 |
acaagagatgttataaatttgtgctatgtgatgtgagattgttttgatcttgtacaataaagcttgagagcatgatgagtagtattttgctttttgaata |
24691714 |
T |
|
| Q |
298 |
taaaagaaatttcatgattttaagataacctttatttcctttcatcaatttcaccaactaatgataacttttacaaaaggctgcnnnnnnncctatcatt |
397 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
24691713 |
taaaagaaatttcatgatttttagataacctttatttcctttcatcaatttcaccaactaatgataacttttacaaaaagctgctttttttcctatcatt |
24691614 |
T |
|
| Q |
398 |
acacagttactttccactcaatgacatgtttcttttgcatggtttcctcattttggtnnnnnnnttaataatttaattcatcataacatgagaactttat |
497 |
Q |
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| T |
24691613 |
acacagttactttccactcaatgacatgtttcttttgcatggtttcctcattttagtaaaaaaattaataatttaattcatcataacatgagaactttat |
24691514 |
T |
|
| Q |
498 |
agtccaagc--nnnnnnnngctttttacttgtgttactaattttcaatgcttgttgcagatattggcactgaaaaatagagaaccaactga |
586 |
Q |
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| T |
24691513 |
agtccaagctaaaaaaaaagctttttacttgtgttactaattttcaatgcttgttgcagatattggcactgaaaaatagagaaccaactga |
24691423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 20809087 - 20809143
Alignment:
| Q |
52 |
tgtgtattttccaaatgtgtgtttgttgtagaagataaaaagtagaagagagataga |
108 |
Q |
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| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagataga |
20809143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 583
Target Start/End: Complemental strand, 17180999 - 17180962
Alignment:
| Q |
546 |
ttgttgcagatattggcactgaaaaatagagaaccaac |
583 |
Q |
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| T |
17180999 |
ttgttacagatattggcattgaaaaatagagaaccaac |
17180962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 30790775 - 30790819
Alignment:
| Q |
48 |
tttatgtgtattttccaaatgtgtgtttgttgtagaagataaaaa |
92 |
Q |
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| T |
30790775 |
tttatgtgtattttttaaatgtgtgtaagttgtagaagataaaaa |
30790819 |
T |
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