View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_high_20 (Length: 294)
Name: NF7920_high_20
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 730807 - 730646
Alignment:
| Q |
15 |
catgtatggcaatgaaattaacttataactaaaattgtgttcttttttaacaatgcaaaactaacttatccttaagaatcaaaatcacagtacaaataat |
114 |
Q |
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| T |
730807 |
catgtatggcaatgaaatgaacttataactaaagttgtgttcttttttaacaatgcaaaactaacttatccttaagaatcaaaatcacagtacaaataat |
730708 |
T |
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| Q |
115 |
gatatgattacaaacttgaaaggtataaatgaacgtaacaattgcaattaaagtgtgaacaa |
176 |
Q |
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| T |
730707 |
gatatgattacaaacttgaaaggtataaatgaacgtagcacttgtaattaaagtgtgaacaa |
730646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 48 - 278
Target Start/End: Complemental strand, 704100 - 703875
Alignment:
| Q |
48 |
attgtgttcttttttaacaatgcaaaa-ctaacttatccttaagaatcaaaatcacagtacaaataatgatatgattacaaacttgaaaggtata-aatg |
145 |
Q |
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| T |
704100 |
attgtggtcttttttaacaaaacaaaaactaactca-cattaataatcaaaatcacaatacgaacagtaatatgattacaaatttgaaaggtgtttaatg |
704002 |
T |
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| Q |
146 |
aacgtaacaattgcaattaaagtgtgaacaagaacaacttatacaaagacgttatttagtaaatt-ataaatcagaattgaaataaaagaagatgaagtt |
244 |
Q |
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| T |
704001 |
aacgtagaaattacgattaaagtgtgaacaa------cttacacaaagattttatttagtaaatttatatatcagagttgaaataaa-gaagatgaagtg |
703909 |
T |
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| Q |
245 |
gaattttgtctactcattaaactcttttggttag |
278 |
Q |
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| T |
703908 |
gaattttgtctagtcgttaaactcttttggttag |
703875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 715709 - 715652
Alignment:
| Q |
52 |
tgttcttttttaacaatgcaaaactaacttatccttaagaatcaaaatcacagtacaa |
109 |
Q |
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| T |
715709 |
tgttcttttttaacaatgcaaaactaactcatcattaataaccaaaatcacaatacaa |
715652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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