View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7920_high_30 (Length: 230)
Name: NF7920_high_30
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 214
Target Start/End: Complemental strand, 32479813 - 32479611
Alignment:
| Q |
13 |
gagaagaaatagttaaaatgtataatatactcgtgtcacatattttgatcagccgcatttgattctaatgaaaaa-catgagaggaacccatcacctaca |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
32479813 |
gagaaaaaatagttaaaatgtataatatactcgtgtcacatattttgatcagccgcatttgattctaatgaaaaaacatgagaggaacccatcacctaca |
32479714 |
T |
|
| Q |
112 |
ttcaaaattagatcctttgcgagcaaatagtttggcatttcgccatcaattacaaatctcattgttggaggcacctgcagtaaaagtgtattcaggatat |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32479713 |
ttcaaaattagatccttcgcgagcaaatagtttggcatttcgccatcaattacaaatctcattgttggaggcacctgcagtaaaagtgcattcaggatat |
32479614 |
T |
|
| Q |
212 |
tat |
214 |
Q |
| |
|
||| |
|
|
| T |
32479613 |
tat |
32479611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 190
Target Start/End: Complemental strand, 17206771 - 17206714
Alignment:
| Q |
133 |
agcaaatagtttggcatttcgccatcaattacaaatctcattgttggaggcacctgca |
190 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
17206771 |
agcaaataattcggcatttctccatccattacaaatctcaaagttggaggcacctgca |
17206714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University