View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_high_4 (Length: 563)

Name: NF7920_high_4
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_high_4
NF7920_high_4
[»] chr1 (9 HSPs)
chr1 (19-556)||(28495695-28496232)
chr1 (429-556)||(36989340-36989467)
chr1 (430-556)||(12804511-12804637)
chr1 (430-556)||(42287117-42287243)
chr1 (430-556)||(4160377-4160503)
chr1 (430-556)||(12774937-12775063)
chr1 (143-202)||(31641897-31641956)
chr1 (430-556)||(50788819-50788945)
chr1 (428-556)||(31644056-31644184)
[»] chr8 (4 HSPs)
chr8 (430-556)||(5788723-5788849)
chr8 (142-206)||(5787996-5788060)
chr8 (490-556)||(33186735-33186801)
chr8 (145-200)||(33186981-33187036)
[»] chr7 (2 HSPs)
chr7 (430-554)||(40749392-40749516)
chr7 (448-556)||(44150818-44150926)
[»] chr2 (3 HSPs)
chr2 (427-556)||(42898298-42898427)
chr2 (428-556)||(40040789-40040917)
chr2 (430-556)||(38895857-38895983)
[»] chr4 (2 HSPs)
chr4 (428-556)||(22085504-22085632)
chr4 (430-556)||(30518148-30518274)


Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 556
Target Start/End: Original strand, 28495695 - 28496232
Alignment:
Q  19 gaattccacctatattttgaagtattccatgtgataaaccatgttctgaatgtgaatgtggattcatcatagcactaccttcttcattcttaaaatttag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495695 gaattccacctatattttgaagtattccatgtgataaaccatgttgtgaatgtgaatgtggattcatcatagcactaccttcttcattcttaaaatttag 28495794  T
Q  119 atttgttgttgtaactgaagttactcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctgttcaaaatatca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495795 atttgttgttgtaactgaagttactcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctgttcaaaatatca 28495894  T
Q  219 acactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattgg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495895 acactcttaagttaaaacttaaaattaaaccagacacataaaaatataatccattaaagaaagcattaaattcaaaacctaacactacatacatgattgg 28495994  T
Q  319 aaaaacctcgtacatgtcacaaatatgaatatgaataaattatagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtat 418  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28495995 aaaaacctcgtacatgtcacaaatatgaatatgaataaattaaagaagcatttattgatttatcacagaaacaaaagattggtgaataaaaggagagtat 28496094  T
Q  419 attaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcata 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496095 attaaatattataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcata 28496194  T
Q  519 ttttttggaacatttttcacatttccacttcttctcac 556  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28496195 ttttttggaacatttttcacatttccacttcttctcac 28496232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 429 - 556
Target Start/End: Complemental strand, 36989467 - 36989340
Alignment:
Q  429 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 528  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  529 catttttcacatttccacttcttctcac 556  Q
    || || |||||||||||||| |||||||    
T  36989367 cacttatcacatttccactttttctcac 36989340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 430 - 556
Target Start/End: Original strand, 12804511 - 12804637
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    | ||||||||||||||||| |||||||    
T  12804611 acttttcacatttccactttttctcac 12804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 430 - 556
Target Start/End: Complemental strand, 42287243 - 42287117
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    |||||||||||||||||||||||||||    
T  42287143 atttttcacatttccacttcttctcac 42287117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 430 - 556
Target Start/End: Complemental strand, 4160503 - 4160377
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    |||| ||||| ||||||||||||||||    
T  4160403 atttctcacacttccacttcttctcac 4160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 556
Target Start/End: Complemental strand, 12775063 - 12774937
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    | |||||||| ||||| || |||||||    
T  12774963 acttttcacacttccattttttctcac 12774937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 31641897 - 31641956
Alignment:
Q  143 tcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctt 202  Q
    ||||||||| ||||| ||||||||||||||||| |||||||| || ||||| ||||||||    
T  31641897 tcttgcactttcttcagccaatgcatcacaaaatgctctatgagttatgaagctatcctt 31641956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 556
Target Start/End: Original strand, 50788819 - 50788945
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    | || ||||| ||||| ||||||||||    
T  50788919 acttatcacacttccatttcttctcac 50788945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 556
Target Start/End: Original strand, 31644056 - 31644184
Alignment:
Q  428 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 527  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  ||||||||||||||||| || || |||||  | || ||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttga 31644155  T
Q  528 acatttttcacatttccacttcttctcac 556  Q
     || || ||||||||||| || |||||||    
T  31644156 gcacttatcacatttccattttttctcac 31644184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 430 - 556
Target Start/End: Original strand, 5788723 - 5788849
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    | |||||||||||||||||||||||||    
T  5788823 acttttcacatttccacttcttctcac 5788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 5787996 - 5788060
Alignment:
Q  142 ctcttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcctttctg 206  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||| |||||    
T  5787996 ctcttgcactctcttctgctaatgcatcacaaaatgctctatgtgttatgaaactgtcccttctg 5788060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 33186801 - 33186735
Alignment:
Q  490 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctcac 556  Q
    |||||||||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctcac 33186735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 33187036 - 33186981
Alignment:
Q  145 ttgcactctcttctgccaatgcatcacaaaaggctctatgtgtaatgaaactatcc 200  Q
    ||||| |||| |||||||| ||||||||||| ||||||||||| || |||||||||    
T  33187036 ttgcattctcctctgccaacgcatcacaaaaagctctatgtgtgataaaactatcc 33186981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 430 - 554
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  530 atttttcacatttccacttcttctc 554  Q
    | || ||||| ||||| ||||||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 448 - 556
Target Start/End: Original strand, 44150818 - 44150926
Alignment:
Q  448 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 547  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  548 tcttctcac 556  Q
    |||||||||    
T  44150918 tcttctcac 44150926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 427 - 556
Target Start/End: Complemental strand, 42898427 - 42898298
Alignment:
Q  427 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 526  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  527 aacatttttcacatttccacttcttctcac 556  Q
    | || || ||||||||||||||||||||||    
T  42898327 agcacttgtcacatttccacttcttctcac 42898298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 556
Target Start/End: Complemental strand, 40040917 - 40040789
Alignment:
Q  428 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 527  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  528 acatttttcacatttccacttcttctcac 556  Q
    ||| || ||||| ||||||||||||||||    
T  40040817 acacttatcacacttccacttcttctcac 40040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 430 - 556
Target Start/End: Original strand, 38895857 - 38895983
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    | || ||||| ||||||||||||||||    
T  38895957 acttctcacacttccacttcttctcac 38895983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 428 - 556
Target Start/End: Original strand, 22085504 - 22085632
Alignment:
Q  428 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 527  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  528 acatttttcacatttccacttcttctcac 556  Q
    ||| |||||||| ||||||||||||||||    
T  22085604 acacttttcacacttccacttcttctcac 22085632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 430 - 556
Target Start/End: Original strand, 30518148 - 30518274
Alignment:
Q  430 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 529  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  |||||||||||||| || || || |||||   ||| || |    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttgagc 30518247  T
Q  530 atttttcacatttccacttcttctcac 556  Q
    | || ||||| ||||||||||| ||||    
T  30518248 acttctcacacttccacttcttttcac 30518274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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