View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_high_5 (Length: 544)
Name: NF7920_high_5
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 12268617 - 12269132
Alignment:
| Q |
1 |
tacaaggtgagtgagtgagtgttgctaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaa |
100 |
Q |
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| T |
12268617 |
tacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccat--------atcaatattttcatttattactaataaattataaa |
12268708 |
T |
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| Q |
101 |
ttattttatagaatcgtttgctataaaa-aataaaggtctaatgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaa |
199 |
Q |
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| T |
12268709 |
ttattttatagaatcgtttgctataaaaaaataaaggtctaatgcaaatatctttttgggtgagtcatctgcaaaatctaaaacatcacaaactggagaa |
12268808 |
T |
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| Q |
200 |
ttttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgttaaagattatgctagtcgt |
299 |
Q |
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| T |
12268809 |
ttttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgttaatgattatgctagtcgt |
12268908 |
T |
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| Q |
300 |
aactcatgctcgtgatttacttcaatcacaagtaattgagccaaatggnnnnnnnnnnccgcatattacgtgtcgtgctaggtgtttgaatccattgaaa |
399 |
Q |
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| T |
12268909 |
aactcatgctcgtgatttacttcaatcacaagtaattgagccaaatggttttttttttccgcatattacgtgtcgtgctaggtgtttgaatccattgaaa |
12269008 |
T |
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| Q |
400 |
tatcacaaatatataccatcatgttttaagtcactagaatcagtcacaaacctcgtgaattattatttttgctacgaaaaatgttatgaggaatgtatta |
499 |
Q |
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| T |
12269009 |
tatcacaaatatataccatcatgttttaagtcactagaatcagtcacaaacctcgagaattattatttttgctacgaaaaatgttatgaggattgtatta |
12269108 |
T |
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| Q |
500 |
attgaataatggtattcatacttt |
523 |
Q |
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| T |
12269109 |
attgaataatggtattcatacttt |
12269132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 12270163 - 12270276
Alignment:
| Q |
11 |
gtgagtgagtgttgctaaaagtcacaaatgcagtagtggctacccatccccccatatcaatattttcatttattactaataaattataaattattttata |
110 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatattttcatttatttgcaataaattataaattactttaaa |
12270262 |
T |
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| Q |
111 |
gaatcgtttgctat |
124 |
Q |
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| T |
12270263 |
gaatcgttggctat |
12270276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 43777849 - 43777715
Alignment:
| Q |
171 |
caaaatctaaaacatcacaaactggagaattttagtccagattcagaaaagataaatagctagaagagttatggtagttagtcaagtaaaacaatgcgtt |
270 |
Q |
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|||||||| |||||||||| | | |||||||| ||| ||||| ||||||| |||||| | ||||||||||| ||| || || || ||| |||| || |
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| T |
43777849 |
caaaatctgaaacatcacagagttgagaatttaagtggagattaagaaaagttaaatattaaaaagagttatggcagtgagccatgtgaaaaaatgtttt |
43777750 |
T |
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| Q |
271 |
gtgatgatgttaaagattatgctagtcgtaactca |
305 |
Q |
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| T |
43777749 |
gcgatgatgttggtgattatgctagttgtaactca |
43777715 |
T |
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