View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_high_9 (Length: 442)

Name: NF7920_high_9
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_high_9
NF7920_high_9
[»] chr4 (13 HSPs)
chr4 (175-424)||(12923166-12923395)
chr4 (4-125)||(12922423-12922544)
chr4 (122-182)||(12922581-12922640)
chr4 (22-95)||(29223140-29223213)
chr4 (47-95)||(4161647-4161695)
chr4 (15-122)||(42375234-42375341)
chr4 (47-101)||(13834542-13834596)
chr4 (22-95)||(8170969-8171042)
chr4 (15-72)||(32123823-32123880)
chr4 (47-95)||(27146313-27146361)
chr4 (47-95)||(35255496-35255544)
chr4 (34-70)||(47097351-47097387)
chr4 (47-102)||(51151053-51151109)
[»] chr3 (13 HSPs)
chr3 (47-111)||(1324499-1324563)
chr3 (45-116)||(51758479-51758550)
chr3 (15-71)||(23195723-23195779)
chr3 (29-95)||(17572017-17572083)
chr3 (49-94)||(26499522-26499567)
chr3 (47-102)||(40619223-40619278)
chr3 (47-102)||(47199725-47199780)
chr3 (34-124)||(7672333-7672423)
chr3 (45-122)||(21568299-21568376)
chr3 (15-68)||(32536466-32536519)
chr3 (15-67)||(24255469-24255521)
chr3 (15-95)||(30843564-30843644)
chr3 (47-95)||(38989754-38989802)
[»] chr7 (6 HSPs)
chr7 (47-120)||(5362469-5362542)
chr7 (22-69)||(25618165-25618212)
chr7 (15-102)||(25688973-25689060)
chr7 (22-101)||(38838654-38838733)
chr7 (47-102)||(8062903-8062958)
chr7 (47-95)||(5358232-5358280)
[»] chr1 (5 HSPs)
chr1 (15-102)||(27900904-27900991)
chr1 (47-101)||(45679523-45679577)
chr1 (30-118)||(16192260-16192348)
chr1 (48-93)||(39162640-39162685)
chr1 (15-95)||(8778977-8779057)
[»] chr5 (2 HSPs)
chr5 (47-93)||(29686453-29686499)
chr5 (22-66)||(33757604-33757648)
[»] chr2 (2 HSPs)
chr2 (10-95)||(7165742-7165827)
chr2 (22-120)||(29926896-29926994)
[»] chr8 (5 HSPs)
chr8 (22-102)||(4586768-4586848)
chr8 (12-120)||(8340304-8340411)
chr8 (47-121)||(21215897-21215971)
chr8 (32-101)||(41302650-41302719)
chr8 (25-93)||(7603920-7603988)
[»] chr6 (4 HSPs)
chr6 (29-88)||(29920451-29920510)
chr6 (47-95)||(4964321-4964369)
chr6 (29-93)||(17848673-17848737)
chr6 (22-70)||(17848836-17848884)
[»] scaffold0009 (1 HSPs)
scaffold0009 (4-82)||(202233-202311)
[»] scaffold0687 (1 HSPs)
scaffold0687 (25-93)||(1604-1672)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 175 - 424
Target Start/End: Original strand, 12923166 - 12923395
Alignment:
Q  175 tttatttttatctttatgtttcatgacctatctcttgagacaaaaaacacataaagaaactttgagaggaattttcttctctaaaacaaacattacttca 274  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12923166 tttatttttatctttatgtttcatgacctatctcttgc----aaaaacacataaagaaactttgagaggaattttcttctctaaaacaaacattacttca 12923261  T
Q  275 gcatcattttcaagttttacatgtttcaagttttccggttctatcatgcttaccggaatggatgttttaagctttttgatttttgcattattccctgata 374  Q
    |||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12923262 gcatcattttc----------------aagttttccggttctatcatgcttaccggaatggatgttttaagctttttgatttttgcattattcccggata 12923345  T
Q  375 actttactcttgtttccggttcgttttctagaatgctagacacatatcac 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12923346 actttactcttgtttccggttcgttttctagaatgctagacacatatcac 12923395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 12922423 - 12922544
Alignment:
Q  4 atgtcgaagaatatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaa 103  Q
    |||||||||| |||||| ||||||||||||||||||||| || |||||||||||||| ||||||| || |||||||||| ||||||||||||||||||||    
T  12922423 atgtcgaagactatttcgactaacgaaatgcaaaataatgaactattttaaaattttgatacattaaaagattatcgtggctactcattacaaattcaaa 12922522  T
Q  104 aactaaaacgactattatctaa 125  Q
    |||||||| |||||||||||||    
T  12922523 aactaaaatgactattatctaa 12922544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 12922581 - 12922640
Alignment:
Q  122 ctaacacacacctgagaattattgtctaggactttacacctcaccaagttatatttatttt 182  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  12922581 ctaacacacacctgagaattattgttcaggactttacacctcaccaagttat-tttatttt 12922640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 29223213 - 29223140
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    ||||||||| |||| ||| || ||  ||||| ||||||| ||||||||||| ||||| ||||||||||||||||    
T  29223213 actaacgaattgcacaatcattaacgattttgaaatttttatacattgaagaattattgtgactactcattaca 29223140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 4161695 - 4161647
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    |||||| ||||||| ||||||||||||| ||| ||||||||||||||||    
T  4161695 tattttgaaattttgatacattgaaggactattgtgactactcattaca 4161647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 42375234 - 42375341
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacga 114  Q
    ||||| |||||||||| |||| ||| | ||| || ||| ||||||  ||||||| ||| ||||| ||| |||||||||||| |||||| ||  |||| ||    
T  42375234 tattttaactaacgaagtgcagaatcaaaaactactttgaaatttcgatacattaaagaattattgtggctactcattacacattcaataatcaaaatga 42375333  T
Q  115 ctattatc 122  Q
    ||||||||    
T  42375334 ctattatc 42375341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 101
Target Start/End: Original strand, 13834542 - 13834596
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattca 101  Q
    |||||||||||||||||||||| || || | | |||||||||||||||| |||||    
T  13834542 tattttaaaattttaatacattaaaagactgttgtgactactcattacacattca 13834596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 8170969 - 8171042
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    ||||||||| |||||||| | | | |||||| ||||||| ||||||||| ||| |||  |||||||||||||||    
T  8170969 actaacgaattgcaaaatcagagactattttgaaatttttatacattgagggactattatgactactcattaca 8171042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 32123880 - 32123823
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaag 72  Q
    ||||| |||||||||| | |||||| | | | ||||||||||||||||||||||||||    
T  32123880 tattttaactaacgaagtacaaaatcaaagactattttaaaattttaatacattgaag 32123823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 27146361 - 27146313
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    |||||||||||||||||||||||| | | |||| ||||||||| |||||    
T  27146361 tattttaaaattttaatacattgatgaactatcatgactactccttaca 27146313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 35255496 - 35255544
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    ||||||||||||||||||||||||  || ||| |||||||||| |||||    
T  35255496 tattttaaaattttaatacattgagagactattgtgactactcgttaca 35255544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 47097387 - 47097351
Alignment:
Q  34 caaaataataaattattttaaaattttaatacattga 70  Q
    |||||| || |||||||||||||||||||||||||||    
T  47097387 caaaatcatgaattattttaaaattttaatacattga 47097351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 51151053 - 51151109
Alignment:
Q  47 tattttaaaattttaatacattga-aggattatcgtgactactcattacaaattcaa 102  Q
    |||||||||||||||||||||||| ||  |||| |||||||||| ||||| ||||||    
T  51151053 tattttaaaattttaatacattgagagatttattgtgactactcgttacacattcaa 51151109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 1324563 - 1324499
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaa 111  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||||||| |||||||||||||||    
T  1324563 tattttaaaattttgatacatcgaaggattattgtgattactcattacacattcaaaaactaaaa 1324499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 51758550 - 51758479
Alignment:
Q  45 attattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgact 116  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||||||||| | ||||||||||||| ||||    
T  51758550 attatattaaaattttgatacattgaatgattatcgttactactcattacacaatcaaaaactaaaatgact 51758479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 23195723 - 23195779
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaa 71  Q
    ||||| |||||| |||||||| ||| | |||||||||||||||||||||||||||||    
T  23195723 tatttgaactaatgaaatgcacaatcagaaattattttaaaattttaatacattgaa 23195779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 17572017 - 17572083
Alignment:
Q  29 aaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    ||||||| ||||||||| ||||||| |||||||||||||||||| | ||| |||| || ||||||||    
T  17572017 aaatgcagaataataaactattttagaattttaatacattgaagaactattgtgattaatcattaca 17572083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 26499567 - 26499522
Alignment:
Q  49 ttttaaaattttaatacattgaaggattatcgtgactactcattac 94  Q
    |||||||||||| ||||||||||| ||||| |||||||||||||||    
T  26499567 ttttaaaattttgatacattgaagtattattgtgactactcattac 26499522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 40619223 - 40619278
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaa 102  Q
    |||||||||||||| ||||||||| ||||||   ||||||||||||||| ||||||    
T  40619223 tattttaaaattttgatacattgagggattaatatgactactcattacacattcaa 40619278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 47199780 - 47199725
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaa 102  Q
    |||||| ||||||| ||||||||||| ||||| |||||| ||||||||| ||||||    
T  47199780 tattttgaaattttgatacattgaagaattattgtgacttctcattacacattcaa 47199725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 7672423 - 7672333
Alignment:
Q  34 caaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgactattatcta 124  Q
    |||||| || |||||||||| |||||||||||||| || ||||||  | |||| | |||||| ||||||  || |||| ||||||||||||    
T  7672423 caaaatcatgaattattttagaattttaatacattaaaagattattataactatttattacacattcaaggaccaaaatgactattatcta 7672333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 21568376 - 21568299
Alignment:
Q  45 attattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgactattatc 122  Q
    |||||||| |||||||  ||||||||  |||||| |||||||||||||||| ||| ||| || |||  ||||||||||    
T  21568376 attattttgaaatttttgtacattgagagattattgtgactactcattacatattaaaagaccaaagtgactattatc 21568299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 32536519 - 32536466
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacatt 68  Q
    ||||| ||||||||||||||| ||| | ||||||||||| ||||| ||||||||    
T  32536519 tattttaactaacgaaatgcacaatcaaaaattattttagaatttcaatacatt 32536466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 24255469 - 24255521
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacat 67  Q
    ||||| || ||||||||||  |||| | |||||||||||||||||||||||||    
T  24255469 tattttaattaacgaaatgagaaatcaaaaattattttaaaattttaatacat 24255521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 30843644 - 30843564
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    ||||||||||||| || |||| ||| ||  ||| |||| ||||| | |||||||||| || ||| ||||||||||||||||    
T  30843644 tatttcaactaacaaattgcataatcatggattgttttgaaattcttatacattgaaagactattgtgactactcattaca 30843564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 38989802 - 38989754
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    |||||||||||||| ||||||||| ||| ||| ||||||| ||||||||    
T  38989802 tattttaaaattttgatacattgatggactattgtgactagtcattaca 38989754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 120
Target Start/End: Original strand, 5362469 - 5362542
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgactatta 120  Q
    |||||||||||||| |||||||||| |||||| |||||||||| ||||| ||||||||| ||||  ||||||||    
T  5362469 tattttaaaattttgatacattgaatgattattgtgactactccttacatattcaaaaagtaaattgactatta 5362542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 25618165 - 25618212
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattg 69  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  25618165 actaacaaaatgcaaaatcataaactattttaaaattttaatacattg 25618212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 25689060 - 25688973
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaa 102  Q
    ||||| ||||||| || |||||||| | ||||||||||| ||||||||||||||||  || ||| |||| || |||||||| ||||||    
T  25689060 tattttaactaacaaagtgcaaaatcagaaattattttagaattttaatacattgagagactattgtgattattcattacacattcaa 25688973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 38838654 - 38838733
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattca 101  Q
    |||||| ||||||||||| | | | ||||||||||||||||||||||||  || ||| |||||||||| ||||| |||||    
T  38838654 actaacaaaatgcaaaatcagagactattttaaaattttaatacattgatagaatattgtgactactcgttacacattca 38838733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 8062903 - 8062958
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaa 102  Q
    ||||||||||||||||||||||||  || ||| |||||||||| ||||| ||||||    
T  8062903 tattttaaaattttaatacattgacagactattgtgactactcgttacacattcaa 8062958  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 5358280 - 5358232
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    |||||||||||||| ||||||||||||| ||| || |||| ||||||||    
T  5358280 tattttaaaattttgatacattgaaggactattgtaactattcattaca 5358232  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 27900904 - 27900991
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaa 102  Q
    |||||| |||||| || |||| ||| ||| | ||||||||| |||| ||||||||||||| |||  ||||||||||||||| ||||||    
T  27900904 tatttcgactaactaattgcacaatcatagactattttaaattttttatacattgaaggactattctgactactcattacacattcaa 27900991  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 45679577 - 45679523
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattca 101  Q
    ||||||||||||||||||| |||| ||||||| |||||||||| ||||| |||||    
T  45679577 tattttaaaattttaatacgttgatggattattgtgactactcgttacacattca 45679523  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 16192260 - 16192348
Alignment:
Q  30 aatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgactat 118  Q
    |||||| ||| | ||| |||||||||||||| ||||||||||||| |||  ||||||||  ||||| ||||||  ||||||| ||||||    
T  16192260 aatgcacaatcagaaactattttaaaattttgatacattgaaggaatattatgactacttgttacacattcaagtactaaaatgactat 16192348  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 39162640 - 39162685
Alignment:
Q  48 attttaaaattttaatacattgaaggattatcgtgactactcatta 93  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||||||    
T  39162640 attttaaaatttcgatacattgaaggactattgtgactactcatta 39162685  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 8779057 - 8778977
Alignment:
Q  15 tatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    ||||| ||||||| || |||| ||| | ||| |||||| ||||||| ||| ||||| ||| ||||||||||| ||||||||    
T  8779057 tattttaactaacaaagtgcacaatcagaaactattttgaaattttgatatattgagggactatcgtgactattcattaca 8778977  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Complemental strand, 29686499 - 29686453
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcatta 93  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  29686499 tattttgaaattttaatacattgagggattattgtgactactcatta 29686453  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 33757604 - 33757648
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaataca 66  Q
    ||||||||||| || ||||| |||||||||||||||||| |||||    
T  33757604 actaacgaaatacacaataaaaaattattttaaaattttgataca 33757648  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 7165742 - 7165827
Alignment:
Q  10 aagaatatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    |||| ||||| ||||||  || |||||||| | | | ||||||||||||||||||||||||| || ||| |||||||||| |||||    
T  7165742 aagactattttaactaataaagtgcaaaatcagagactattttaaaattttaatacattgaaagactattgtgactactcgttaca 7165827  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 29926896 - 29926994
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgactatta 120  Q
    ||||| |||||||| ||| ||  | |||||||||||||| ||||||  ||||||||| |  |||| | |||||| ||||||| ||||||| ||||||||    
T  29926896 actaatgaaatgcacaatcattgactattttaaaattttgatacatcaaaggattattgcaactatttattacacattcaaagactaaaatgactatta 29926994  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 4586848 - 4586768
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaa 102  Q
    ||||||||| |||||||| ||| | |||||||||||||||||||||| |  || ||| || ||||||| ||||| ||||||    
T  4586848 actaacgaagtgcaaaatcatagactattttaaaattttaatacattaagagactattgtaactactcgttacacattcaa 4586768  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 8340304 - 8340411
Alignment:
Q  12 gaatatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaa 111  Q
    ||||||||  |||| ||||||||| ||| | |||||||||| || |||| ||||||| ||||| | | |||||||||||||| | |||||| ||| ||||    
T  8340304 gaatattttgactagcgaaatgcacaatcaaaaattattttgaa-ttttgatacattaaaggactgttgtgactactcattatacattcaagaaccaaaa 8340402  T
Q  112 cgactatta 120  Q
     ||||||||    
T  8340403 tgactatta 8340411  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 121
Target Start/End: Complemental strand, 21215971 - 21215897
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattacaaattcaaaaactaaaacgactattat 121  Q
    |||||| |||||| |||||||||||||| ||| ||| ||||||||| || ||||||  || |||| |||||||||    
T  21215971 tattttgaaatttcaatacattgaaggactattgtggctactcattccatattcaatgaccaaaatgactattat 21215897  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 41302719 - 41302650
Alignment:
Q  32 tgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcattacaaattca 101  Q
    |||||||| ||| | ||||||||||||||||||| ||||| || ||| |||| ||||| ||||| |||||    
T  41302719 tgcaaaatcatagactattttaaaattttaatactttgaaagactattgtgattactcgttacacattca 41302650  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 7603988 - 7603920
Alignment:
Q  25 aacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcatta 93  Q
    |||||| |||| ||| | |||||||||||||||||| |||||||||| || |||   ||||||||||||    
T  7603988 aacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactattccgactactcatta 7603920  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 29920510 - 29920451
Alignment:
Q  29 aaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactact 88  Q
    ||||||| ||| | ||| |||||| ||||||| ||||||||||||||||| |||||||||    
T  29920510 aaatgcataatcaaaaactattttgaaattttgatacattgaaggattattgtgactact 29920451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 4964321 - 4964369
Alignment:
Q  47 tattttaaaattttaatacattgaaggattatcgtgactactcattaca 95  Q
    |||||||||||||||||||||||||||| ||  ||| ||||| ||||||    
T  4964321 tattttaaaattttaatacattgaaggactagtgtggctactaattaca 4964369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 17848737 - 17848673
Alignment:
Q  29 aaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcatta 93  Q
    ||||||||||| | ||| || ||||||||||||||||||| |  || ||||||||| ||||||||    
T  17848737 aaatgcaaaattaaaaactaatttaaaattttaatacatttagagactatcgtgacaactcatta 17848673  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 17848836 - 17848884
Alignment:
Q  22 actaacgaaatgcaaaataataaattattttaaaattttaatacattga 70  Q
    |||||||||||||| |||   |||||||||||||||||| |||||||||    
T  17848836 actaacgaaatgcacaatctgaaattattttaaaattttgatacattga 17848884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 202311 - 202233
Alignment:
Q  4 atgtcgaagaatatttcaactaacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtg 82  Q
    |||||||||| ||||| |||||| | | |||| ||| | | |||||||||||||||| ||| |||||| ||||||||||    
T  202311 atgtcgaagattattttaactaatgtagtgcacaatcaaatattattttaaaattttgataaattgaatgattatcgtg 202233  T

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Target: scaffold0687 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 1672 - 1604
Alignment:
Q  25 aacgaaatgcaaaataataaattattttaaaattttaatacattgaaggattatcgtgactactcatta 93  Q
    |||||| |||| ||| | |||||||||||||||||| |||||||||| || |||   ||||||||||||    
T  1672 aacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactattccgactactcatta 1604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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