View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_low_1 (Length: 688)

Name: NF7920_low_1
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_low_1
NF7920_low_1
[»] chr3 (1 HSPs)
chr3 (223-334)||(45903407-45903518)
[»] chr6 (6 HSPs)
chr6 (223-333)||(23594519-23594629)
chr6 (409-569)||(32739580-32739740)
chr6 (221-334)||(14277210-14277323)
chr6 (223-333)||(26377900-26378010)
chr6 (409-599)||(29133195-29133383)
chr6 (100-177)||(29140890-29140967)
[»] chr1 (9 HSPs)
chr1 (223-327)||(19595974-19596078)
chr1 (223-334)||(32495723-32495834)
chr1 (223-333)||(46336402-46336512)
chr1 (223-335)||(43997149-43997261)
chr1 (223-298)||(43632938-43633013)
chr1 (223-332)||(11692551-11692661)
chr1 (285-333)||(19887028-19887076)
chr1 (364-409)||(39647086-39647131)
chr1 (307-335)||(43632996-43633024)
[»] chr5 (3 HSPs)
chr5 (223-333)||(39305458-39305568)
chr5 (223-309)||(17540054-17540140)
chr5 (223-316)||(9625448-9625541)
[»] chr4 (7 HSPs)
chr4 (223-333)||(12240657-12240767)
chr4 (223-333)||(49620674-49620784)
chr4 (225-328)||(24851008-24851111)
chr4 (61-166)||(9572096-9572202)
chr4 (223-331)||(23666587-23666695)
chr4 (223-310)||(14625621-14625709)
chr4 (286-322)||(24850927-24850963)
[»] scaffold1603 (1 HSPs)
scaffold1603 (223-332)||(972-1081)
[»] chr8 (2 HSPs)
chr8 (223-335)||(13083588-13083700)
chr8 (223-335)||(41388868-41388981)
[»] chr7 (7 HSPs)
chr7 (223-333)||(41985336-41985446)
chr7 (242-333)||(19681049-19681140)
chr7 (223-333)||(4926101-4926211)
chr7 (223-309)||(14792361-14792447)
chr7 (223-328)||(7260257-7260362)
chr7 (226-333)||(1264952-1265060)
chr7 (279-333)||(1261986-1262040)
[»] chr2 (3 HSPs)
chr2 (223-333)||(38992799-38992909)
chr2 (275-335)||(26692003-26692063)
chr2 (248-333)||(26691907-26691990)
[»] scaffold0027 (1 HSPs)
scaffold0027 (225-335)||(21950-22055)
[»] scaffold0613 (1 HSPs)
scaffold0613 (135-188)||(4018-4071)
[»] scaffold0005 (1 HSPs)
scaffold0005 (223-310)||(191674-191762)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 223 - 334
Target Start/End: Original strand, 45903407 - 45903518
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45903407 aaattgttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 45903506  T
Q  323 aatccagatccg 334  Q
    ||||| ||||||    
T  45903507 aatcctgatccg 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 23594629 - 23594519
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23594629 aaattgttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 23594530  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  23594529 aatcctgatcc 23594519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 409 - 569
Target Start/End: Original strand, 32739580 - 32739740
Alignment:
Q  409 agcttgacacactccatcgtcgtcgacatggtttcagctactaagtgagttggagaagaacaaacttgtctataaaactc-atagtttttgccttgacga 507  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||| |||||||| |||||    
T  32739580 agcttgacacactccatcgttgtcgacatggtttcagctactaagtgagttggacaagtacaagcttgtctataaaactcaatag-ttttgcctagacga 32739678  T
Q  508 acatctcttccgcaccacaaatgtacgttcctactccaaaccgacagtctcttgtaaaaatc 569  Q
    ||||||  |||||| |||||||| || |||| | ||||||||||||||| ||||||||||||    
T  32739679 acatcttgtccgcaacacaaatgcacattccaattccaaaccgacagtcacttgtaaaaatc 32739740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 221 - 334
Target Start/End: Complemental strand, 14277323 - 14277210
Alignment:
Q  221 ttaaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcag 320  Q
    ||||||||||||||| ||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14277323 ttaaattgttgaaattcgtgctgtgaattggaatcgtcagatcatgaattgacggctgagatttgctactgcggcaaactgtgtgaatttgctacagcag 14277224  T
Q  321 caaatccagatccg 334  Q
    ||||||| ||||||    
T  14277223 caaatcctgatccg 14277210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 26377900 - 26378010
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||    
T  26377900 aaattgttgaaatttgtgctgtgaattggaaccgtcagatcatggattgatgactgagatttgctactgcggcaaactgtgtgaatttgctacaacaaca 26377999  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  26378000 aatcctgatcc 26378010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 409 - 599
Target Start/End: Complemental strand, 29133383 - 29133195
Alignment:
Q  409 agcttgacacactccatcgtcgtcgacatggtttcagctactaagtgagttggagaagaacaaacttgtctataaaactcatagtttttgccttgacgaa 508  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||| || |||||| ||||||  |||||||||||  || ||    
T  29133383 agcttgacacactccatcgttgtcgacatggtttcagctagtaagtaagttggacaagaacaagctcgtctatcaaactc--agtttttgcctcaacaaa 29133286  T
Q  509 catctcttccgcaccacaaatgtacgttcctactccaaaccgacagtctcttgtaaaaatcgtagcatcaacgttgcacttgacttccccc 599  Q
    |||||| |  ||| ||  |||| || ||  || ||||| ||||||||| | | ||||||   |||| |||||||||||||| |||||||||    
T  29133285 catctccttggcaacatgaatgcacattattattccaagccgacagtcacatttaaaaaatttagcgtcaacgttgcacttcacttccccc 29133195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 29140967 - 29140890
Alignment:
Q  100 atattgctggaagaatgtaatagaatttcaaaaacagatttgctgctcattagattatcaagttattcatatagaagt 177  Q
    |||||||||| | ||||||||  || |||||| | ||||||| ||||||||||||||||||||| |||||||||||||    
T  29140967 atattgctggtacaatgtaatgaaagttcaaatagagatttgttgctcattagattatcaagtttttcatatagaagt 29140890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 19596078 - 19595974
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19596078 aaattgttgaaatctgtgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacaacagca 19595979  T
Q  323 aatcc 327  Q
    |||||    
T  19595978 aatcc 19595974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 32495834 - 32495723
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    ||||| |||||||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32495834 aaattattgaaatttgtgttgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 32495735  T
Q  323 aatccagatccg 334  Q
    ||||| ||||||    
T  32495734 aatcctgatccg 32495723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 46336402 - 46336512
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    ||||| |||||||  ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46336402 aaattattgaaatttgtgctgtgaattggaaccgtcaaatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 46336501  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  46336502 aatcctgatcc 46336512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 43997261 - 43997149
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||  ||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  43997261 aaattgttgaaatatgtgctgtgaattgaaaccgtcagatcatgaattgatggctgagatttgcaactgcgataaactgtgtgaatttgctacagcagca 43997162  T
Q  323 aatccagatccgt 335  Q
    |||||||||||||    
T  43997161 aatccagatccgt 43997149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 43632938 - 43633013
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaa 298  Q
    ||||||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||||||| || |||||    
T  43632938 aaattgttgaatttcgtgctgtgaattggaaccgtcagatcatggattgatggttgagatttgctacagcagcaaa 43633013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 11692551 - 11692661
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccga-cagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagc 321  Q
    |||||||||||||| ||  |||||||| ||| ||| ||| | ||||||||||||||||||||| ||||| | |||||||| |||||||||||||| ||||    
T  11692551 aaattgttgaaatcggtattgtgaatttgaaacgatcaggttatggattgatggctgagattttctactacagcaaactgcgtgaatttgctacaccagc 11692650  T
Q  322 aaatccagatc 332  Q
    | |||||||||    
T  11692651 atatccagatc 11692661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 19887028 - 19887076
Alignment:
Q  285 gctactgcggcaaactgtgtgaatttgctacagcagcaaatccagatcc 333  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  19887028 gctactgcggcaaactgtgtgaatttgctacaacagtaaatccagatcc 19887076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 409
Target Start/End: Original strand, 39647086 - 39647131
Alignment:
Q  364 aagtagcggaaggtcttgcatgaacaagaacaagtatgaaaacgga 409  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||    
T  39647086 aagtagcggcaggtctagcatgaacaagaacaagtttgaaaacgga 39647131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 43632996 - 43633024
Alignment:
Q  307 atttgctacagcagcaaatccagatccgt 335  Q
    |||||||||||||||||||||||||||||    
T  43632996 atttgctacagcagcaaatccagatccgt 43633024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 39305568 - 39305458
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39305568 aaattgttgaaatttgtgctgtaaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 39305469  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  39305468 aatcctgatcc 39305458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 17540054 - 17540140
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatt 309  Q
    |||||||||||||  ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17540054 aaattgttgaaatttgtgctgtgaattggaaccgtcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatt 17540140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 9625541 - 9625448
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctaca 316  Q
    |||||||||||||| ||| | ||||||||||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  9625541 aaattgttgaaatctgtgttatgaattggaaccgtcagatcatggattgatagctgatatttgctactgcgacaaactgtgtgaatttgctaca 9625448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 12240657 - 12240767
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12240657 aaattgttgaaatttatgctgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 12240756  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  12240757 aatcctgatcc 12240767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 49620674 - 49620784
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||  ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  49620674 aaattgttgaaatttgtgctgtaaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactatgtgaatttgctacagcaaca 49620773  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  49620774 aatcctgatcc 49620784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 225 - 328
Target Start/End: Original strand, 24851008 - 24851111
Alignment:
Q  225 attgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaa 324  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  24851008 attgttgaaatctgtgttgtgaattggaaccgtcagatcatggattgatggatgagatttactactgcggaaaactgtgtgaatttgctacagcagcaaa 24851107  T
Q  325 tcca 328  Q
    ||||    
T  24851108 tcca 24851111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 9572202 - 9572096
Alignment:
Q  61 attagaatttggaatgcaaaagaaaaacacagtggatacata-ttgctggaagaatgtaatagaatttcaaaaacagatttgctgctcattagattatca 159  Q
    ||||| ||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  9572202 attaggatttggaatgcaaaagaaaaacatagtggatacataatttctggaagaatgtaatagaatttcaaagagagatttgctgctcattagattatca 9572103  T
Q  160 agttatt 166  Q
    |||||||    
T  9572102 agttatt 9572096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 223 - 331
Target Start/End: Complemental strand, 23666695 - 23666587
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||||||| || |||||||||||| | ||| ||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||    
T  23666695 aaattgttgaaatccgtgttgcgaattggaaccgtcggattatggattgatgactgagattttctcctacggcaaactgtgtgaatttgctacagcagca 23666596  T
Q  323 aatccagat 331  Q
    |||||||||    
T  23666595 aatccagat 23666587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 14625621 - 14625709
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaatt-ggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaattt 310  Q
    ||||||||||||||| || ||| |||| ||||| || ||||||| |||||||||  | | |||| ||||||| ||||||||||| ||||    
T  14625621 aaattgttgaaatccatgttgtaaatttggaactgatagatcatagattgatggtcgtgttttgttactgcgccaaactgtgtgtattt 14625709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 24850963 - 24850927
Alignment:
Q  286 ctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  24850963 ctactgcggtaaactgtgtgaatttgctacaacagca 24850927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1603 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold1603
Description:

Target: scaffold1603; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 223 - 332
Target Start/End: Original strand, 972 - 1081
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  972 aaattgttgaaatccgtgctgtgaattggaaccgtcagatcatgaattgatggttgagatttgctactgcgacaaactgtgtgaatttgctacagcagca 1071  T
Q  323 aatccagatc 332  Q
    ||| ||||||    
T  1072 aattcagatc 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 13083700 - 13083588
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| |    
T  13083700 aaattgttgaaatccgtgctgtgaattggaaccatcagatcatggattgatcgctgagatttgctactgcggcaaactgtgtaaatttgctacaacagta 13083601  T
Q  323 aatccagatccgt 335  Q
    |||||||||||||    
T  13083600 aatccagatccgt 13083588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 335
Target Start/End: Complemental strand, 41388981 - 41388868
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattg-gaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagc 321  Q
    |||||||||||||||| | ||||||||  |||||| || |||||  ||||||||  |||||||||||||||| ||||| |||||||||||||||| || |    
T  41388981 aaattgttgaaatccgagatgtgaatttagaaccgtcatatcataaattgatggtcgagatttgctactgcgacaaaccgtgtgaatttgctacaacatc 41388882  T
Q  322 aaatccagatccgt 335  Q
    |||| ||| |||||    
T  41388881 aaattcaggtccgt 41388868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 41985336 - 41985446
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  41985336 aaattgttgaaatccgtgttgtgaattggaaccgtcggatcatggattgatggctgagatttgctactgcgacaaattgtgtgaatttgctacggcagca 41985435  T
Q  323 aatccagatcc 333  Q
    |||||||||||    
T  41985436 aatccagatcc 41985446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 242 - 333
Target Start/End: Original strand, 19681049 - 19681140
Alignment:
Q  242 tgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatccagatcc 333  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||    
T  19681049 tgtgaattggaaccgtcagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacaacggtaaatcctgatcc 19681140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 223 - 333
Target Start/End: Complemental strand, 4926211 - 4926101
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||||||||  |||||  ||||| ||||||  ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  4926211 aaattgttgaaatttgtgctacgaattagaaccgttagatcatggattgatggctgagatttgctacagcagcaaactgtgtgaatttgctacagcagca 4926112  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  4926111 aatcctgatcc 4926101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 223 - 309
Target Start/End: Complemental strand, 14792447 - 14792361
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatt 309  Q
    |||||||||||||  ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14792447 aaattgttgaaatttgtgttgtgaattggaaccgtcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatt 14792361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 7260362 - 7260257
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    |||||||| |||||  |||||| ||||| ||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  7260362 aaattgttaaaatctttgctgtaaattgaaacagtcagatcatagattgatggctgagatttactactgcggcaaactgtgtgaatttgctatagcagca 7260263  T
Q  323 aatcca 328  Q
    ||||||    
T  7260262 aatcca 7260257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 1264952 - 1265060
Alignment:
Q  226 ttgttgaaatccgtgctgtgaattggaaccga-cagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaa 324  Q
    ||||| ||||| |||||||||||| ||| | | ||||||||| ||||||||||||||||| ||| |   ||||||||| |||||||||||||||||||||    
T  1264952 ttgttaaaatctgtgctgtgaatttgaaaccatcagatcatgaattgatggctgagatttactattatagcaaactgtttgaatttgctacagcagcaaa 1265051  T
Q  325 tccagatcc 333  Q
    |||||||||    
T  1265052 tccagatcc 1265060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 1262040 - 1261986
Alignment:
Q  279 agatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatccagatcc 333  Q
    ||||||||||||||||||||||||||||||||| |||| || |||||||| ||||    
T  1262040 agatttgctactgcggcaaactgtgtgaatttggtacaacaacaaatccaaatcc 1261986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 223 - 333
Target Start/End: Original strand, 38992799 - 38992909
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 322  Q
    ||||| |||||||| ||||| ||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38992799 aaattattgaaatctgtgctttgaattgcaaccttcagatcatagattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagca 38992898  T
Q  323 aatccagatcc 333  Q
    ||||| |||||    
T  38992899 aatcctgatcc 38992909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 26692003 - 26692063
Alignment:
Q  275 gctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatccagatccgt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26692003 gctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatccaaatccgt 26692063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 248 - 333
Target Start/End: Complemental strand, 26691990 - 26691907
Alignment:
Q  248 ttggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaatccagatcc 333  Q
    ||||| ||| || ||||||||||| ||||||| |||||||||||||||  ||||| ||||||||||||||||| ||||||||||||    
T  26691990 ttggacccgtcatatcatggattgctggctgaaatttgctactgcggc--actgtttgaatttgctacagcagtaaatccagatcc 26691907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 21950 - 22055
Alignment:
Q  225 attgttgaaatccgtgctgtgaattggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaatttgctacagcagcaaa 324  Q
    |||||| ||||| ||  ||||||||||||||| ||||||||||||||||||     ||||||||||||  ||||||||||||||||| |||| || ||||    
T  21950 attgttaaaatctgtattgtgaattggaaccgtcagatcatggattgatgg-----atttgctactgcaacaaactgtgtgaatttgttacaacaacaaa 22044  T
Q  325 tccagatccgt 335  Q
    |||||||||||    
T  22045 tccagatccgt 22055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Complemental strand, 4071 - 4018
Alignment:
Q  135 agatttgctgctcattagattatcaagttattcatatagaagttatttcaacat 188  Q
    ||||||| | ||||||||||||||||||| | ||||| ||||||||||| ||||    
T  4071 agatttgattctcattagattatcaagttttccatattgaagttatttctacat 4018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 191762 - 191674
Alignment:
Q  223 aaattgttgaaatccgtgctgtgaatt-ggaaccgacagatcatggattgatggctgagatttgctactgcggcaaactgtgtgaattt 310  Q
    ||||||||||||||| || ||| |||| ||||| || ||||||| |||||||||  | | |||| ||||||| ||||||||||| ||||    
T  191762 aaattgttgaaatccatgttgtaaatttggaactgatagatcatagattgatggtcgtgttttgttactgcgccaaactgtgtgtattt 191674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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