View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_low_10 (Length: 436)

Name: NF7920_low_10
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_low_10
NF7920_low_10
[»] chr4 (4 HSPs)
chr4 (12-424)||(54396451-54396863)
chr4 (12-360)||(23587525-23587873)
chr4 (12-360)||(23596377-23596725)
chr4 (286-360)||(35132750-35132824)
[»] chr7 (21 HSPs)
chr7 (12-360)||(8102695-8103043)
chr7 (12-363)||(8017202-8017553)
chr7 (46-360)||(39985708-39986022)
chr7 (290-360)||(7877525-7877595)
chr7 (38-108)||(8581754-8581824)
chr7 (239-360)||(8602229-8602350)
chr7 (240-360)||(8590894-8591014)
chr7 (286-366)||(10494160-10494240)
chr7 (286-357)||(17260543-17260614)
chr7 (290-351)||(8382677-8382738)
chr7 (286-366)||(13333242-13333322)
chr7 (314-357)||(6789842-6789885)
chr7 (286-360)||(3147574-3147648)
chr7 (227-357)||(8585501-8585631)
chr7 (290-360)||(8636135-8636205)
chr7 (317-363)||(8659696-8659742)
chr7 (317-366)||(1301797-1301846)
chr7 (23-112)||(7877773-7877862)
chr7 (47-108)||(8570374-8570435)
chr7 (47-111)||(8609980-8610044)
chr7 (61-125)||(8628609-8628673)
[»] chr2 (9 HSPs)
chr2 (224-360)||(17716485-17716621)
chr2 (149-393)||(5445510-5445754)
chr2 (291-367)||(12234996-12235072)
chr2 (293-360)||(12245198-12245265)
chr2 (314-363)||(7542556-7542605)
chr2 (46-93)||(17648100-17648147)
chr2 (46-93)||(17666742-17666789)
chr2 (290-360)||(16657309-16657379)
chr2 (12-93)||(17705797-17705878)
[»] chr1 (1 HSPs)
chr1 (290-363)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 12 - 424
Target Start/End: Original strand, 54396451 - 54396863
Alignment:
Q  12 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396451 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 54396550  T
Q  112 tttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396551 tttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaa 54396650  T
Q  212 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396651 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 54396750  T
Q  312 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396751 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactggatgaccaagaaaagcttcagcaacttctctcatcttgatcaacac 54396850  T
Q  412 cattgaagaaatt 424  Q
    |||||||||||||    
T  54396851 cattgaagaaatt 54396863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 23587873 - 23587525
Alignment:
Q  12 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    |||||||||||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |||||    
T  23587873 taatatccttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagc 23587774  T
Q  112 tttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaa 211  Q
    ||| || || ||||| ||||| ||||||||||| || |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |    
T  23587773 tttgacctcaaagataccttcctcaatagtaagtagggaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcacccgtgcttgta 23587674  T
Q  212 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 311  Q
    ||||||||||| | |||||||||||| |||||||| ||||| ||||||||||| ||||||||||| |  || |||||  |||| |||||||| |||||||    
T  23587673 gctttcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagctt 23587574  T
Q  312 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||| ||||| ||||| |||||||| ||||| ||||| ||||||||    
T  23587573 gacgttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 12 - 360
Target Start/End: Complemental strand, 23596725 - 23596377
Alignment:
Q  12 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||||| |||||||| |||||| | || ||   ||||||||| |||||||| |||||||||||||||||||| || | ||| ||||||||||| |||||    
T  23596725 taatatctttcttattcttcctcttgaattcttgaacaaaatggttcaccatcctgttatcaaaatcttcacctcccaaatgtgtatcaccagctgtagc 23596626  T
Q  112 tttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaa 211  Q
    |||||| || ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |  || |||||||| |||||||  || ||  | || | |    
T  23596625 tttcacctcaaagataccttcctcaatagtaagaagtgaaacatcaaaagttccaccaccaagatcgaaaataagaacgttcttctcaccagtacttgta 23596526  T
Q  212 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 311  Q
    ||||||||||| | |||||||||||| || |||||||| ||||| |||||||| |||| |||||| |  || |||||  |||||||||| || |||||||    
T  23596525 gctttcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagctt 23596426  T
Q  312 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||| ||||| ||||| || ||||| || || ||||| ||||||||    
T  23596425 gacgttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 35132750 - 35132824
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||||| | || ||||  |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  35132750 aatagcaccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcattctt 35132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 8102695 - 8103043
Alignment:
Q  12 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||||||||||| || |||||| |||||||   |||||||||  | ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  8102695 taatatccttcttgttcttcctcttaaactcttgaacaaaatgggtaaccattctgttatcaaaatcttcaccaccaagatgggtatcacctgcagtagc 8102794  T
Q  112 tttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaa 211  Q
     || ||||| || || || ||||||||||||||||| || ||||| ||||| ||||| ||||| ||||| || | ||||||||  || ||    || |      
T  8102795 cttaacttcaaatataccctcttcaatagtaagaagtgacacatcaaaagtaccaccacccaaatcaaagatcaacacgttcttctcaccaacacttgtc 8102894  T
Q  212 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 311  Q
    || || || || | ||| || ||||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |  ||| ||||||||||||| || ||||    
T  8102895 gcctttttgtcaagaccgtaggcaatagcagcagcagttggctcattaataattctcaaaacatttaaaccagcgataacaccagcatctttagttgctt 8102994  T
Q  312 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||| |||||||||||||| |||||||| ||||| || || ||||||||    
T  8102995 gacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 12 - 363
Target Start/End: Complemental strand, 8017553 - 8017202
Alignment:
Q  12 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||||||||||| || |||||| ||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  8017553 taatatccttcttgttcttcctcttaaactcctgaacaaaatgattaaccattctgttgtcaaaatcttcaccaccaagatgggtatcaccagcagtagc 8017454  T
Q  112 tttcacttcgaagatcccttcttcaatagtaagaagagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaa 211  Q
     || ||||| || || || |||||||||||||||||||| ||||| ||||| ||||||||||||||||| || | ||| ||||  |||||    || | |    
T  8017453 cttaacttcaaaaataccctcttcaatagtaagaagagacacatcaaaagtaccacctcccaagtcaaagatcaacacattcttctcgccaacacttgta 8017354  T
Q  212 gctttcttatccaaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagctt 311  Q
    || || || || |  || || ||||| || ||||| || ||||| || ||||| ||||| ||||| |  || | |||  |||| ||||| || || ||||    
T  8017353 gcctttttgtcaagtccgtacgcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggctt 8017254  T
Q  312 gacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 363  Q
    |||| || ||||||||||| ||||| ||||| |||||||| |||||||||||    
T  8017253 gacgctgcgaatcattgaagtaagctggaactgtaacaacggcattcttcac 8017202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 360
Target Start/End: Original strand, 39985708 - 39986022
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaagatcccttcttcaatagtaaga 145  Q
    |||||| || |||||||||||||| |||||||| ||||| |||||||| || || || || || |||||||| || ||||| || ||||||||||| ||     
T  39985708 aacaaagtggttcaccattctgttgtcaaaatcctcacctccaagatgggtgtctccggctgtggctttcacctcaaagataccctcttcaatagttagc 39985807  T
Q  146 agagaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcag 245  Q
    | ||| ||||| ||||| ||||| || | |||||| || |  || ||||  || ||    || |  |||||||| || | |||||||||||| |||||||    
T  39985808 aaagagacatcaaaagtaccaccaccaaggtcaaagatcaagacattcttctctccaacactggttgctttcttgtcaagaccataagcaatggcagcag 39985907  T
Q  246 cagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagt 345  Q
    |||| |||||||| ||||| | ||  ||||| | ||| | |||| | |||||||| || ||||||||||| || || ||||| || |||||||| |||||    
T  39985908 cagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacgctgggagtcattaaagtaagcagggacagt 39986007  T
Q  346 aacaacagcattctt 360  Q
    |||||||||||||||    
T  39986008 aacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 7877595 - 7877525
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||| || ||||  ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  7877595 gcaccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattctt 7877525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 8581754 - 8581824
Alignment:
Q  38 aactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 108  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| || || || ||||| || ||||||||    
T  8581754 aactccgacacaaagtgattcaccattctgttatcaaaatcttcccctcccaggtgagtgtctccagcagt 8581824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 360
Target Start/End: Original strand, 8602229 - 8602350
Alignment:
Q  239 gcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcag 338  Q
    ||||| ||||| |||||||| || |||| ||  ||||| | ||| | ||| |||||||||||||| || ||||  || ||||||||||| |||||||| |    
T  8602229 gcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcattaaaataagccg 8602328  T
Q  339 gaacagtaacaacagcattctt 360  Q
    | ||||||||||| ||||||||    
T  8602329 gcacagtaacaactgcattctt 8602350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 360
Target Start/End: Original strand, 8590894 - 8591014
Alignment:
Q  240 cagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcagg 339  Q
    |||| ||||| || |||||||| |||| ||  |||||||| || | |||  ||||||||||||| |||||||  |  ||||||||||| |||||||| ||    
T  8590894 cagcggcagttggttcattaattatccgcattacattcaagccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctgg 8590993  T
Q  340 aacagtaacaacagcattctt 360  Q
     ||||||||||| ||||||||    
T  8590994 cacagtaacaactgcattctt 8591014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 10494240 - 10494160
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 366  Q
    |||||||||||||||  | ||||| |  ||||||||||| ||||| ||||| || |||||||||||||||||||| |||||    
T  10494240 aatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactgg 10494160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 286 - 357
Target Start/End: Original strand, 17260543 - 17260614
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcatt 357  Q
    |||| ||||||||||| | || ||||  || ||||||||||||||||||||||||||||||| |||| ||||    
T  17260543 aataacaccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacatt 17260614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 8382738 - 8382677
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaac 351  Q
    |||||||||||||| || ||||  |||||||||||||||||||| ||||| || ||||||||    
T  8382738 gcaccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 366
Target Start/End: Complemental strand, 13333322 - 13333242
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 366  Q
    |||||||||||||||| | || || |  || |||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  13333322 aatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactgg 13333242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 6789842 - 6789885
Alignment:
Q  314 cgttgagaatcattgaaataagcaggaacagtaacaacagcatt 357  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||    
T  6789842 cgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 360
Target Start/End: Original strand, 3147574 - 3147648
Alignment:
Q  286 aatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||| ||||||||||| | || ||||  || |||| |||||||||||||||||| || |||||||| ||||||||    
T  3147574 aataacaccagcatctattgtcgctttccgctgagcatcattgaaataagcaggtacggtaacaactgcattctt 3147648  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 8585631 - 8585501
Alignment:
Q  227 ccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcat 326  Q
    ||||| ||||| || |||||||| || ||||| || |||||||  ||||| |  || | ||| |||||||||||  | || ||||  || ||||||||||    
T  8585631 ccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcat 8585532  T
Q  327 tgaaataagcaggaacagtaacaacagcatt 357  Q
    ||||||||||||| ||||| ||||| |||||    
T  8585531 tgaaataagcaggcacagtcacaactgcatt 8585501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 8636205 - 8636135
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||||| || | || ||| |||||||||||||||||||| || |||||||  || ||||||||    
T  8636205 gcaccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattctt 8636135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 8659696 - 8659742
Alignment:
Q  317 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 363  Q
    |||||||||||||| || ||||| || ||||||||||||||||||||    
T  8659696 tgagaatcattgaactatgcaggcactgtaacaacagcattcttcac 8659742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 1301797 - 1301846
Alignment:
Q  317 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 366  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  1301797 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 1301846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 7877862 - 7877773
Alignment:
Q  23 ttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagct 112  Q
    ||||| |||||| ||||||||   || ||||| |||| ||||||||||||||| || || ||||| || |||||||| || |||||||||    
T  7877862 ttattcttcctcttaaactccatcactaaatggttcaacattctgttatcaaagtcctctccacctaggtgagtatctccggcagtagct 7877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 8570374 - 8570435
Alignment:
Q  47 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagt 108  Q
    ||||| ||| ||| |||||||||||||||||||||||| || || ||||| || ||||||||    
T  8570374 acaaagtgagtcaacattctgttatcaaaatcttcacctcccaggtgagtgtctccagcagt 8570435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 8609980 - 8610044
Alignment:
Q  47 acaaaatgattcaccattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagc 111  Q
    ||||| ||||| |||||||||| |||||| || || || ||||| |||||||| |||||||||||    
T  8609980 acaaagtgattaaccattctgtgatcaaagtcctctcctccaaggtgagtatctccagcagtagc 8610044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 8628609 - 8628673
Alignment:
Q  61 cattctgttatcaaaatcttcaccaccaagatgagtatcaccagcagtagctttcacttcgaaga 125  Q
    ||||||||||||||| || || |||||||| |||||||  |||||||| ||||| ||||| ||||    
T  8628609 cattctgttatcaaagtcctctccaccaaggtgagtatttccagcagtggctttaacttcaaaga 8628673  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 360
Target Start/End: Complemental strand, 17716621 - 17716485
Alignment:
Q  224 aaaccataagcaattgcagcagcagtaggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaat 323  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||  | ||| | ||| | ||||||||||||||  || |||||||| |  ||||||     
T  17716621 aaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctgagaaa 17716522  T
Q  324 cattgaaataagcaggaacagtaacaacagcattctt 360  Q
     ||| || |||||||| ||||||||||| ||||||||    
T  17716521 aattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 149 - 393
Target Start/End: Complemental strand, 5445754 - 5445510
Alignment:
Q  149 gaaacatcgaaagttccacctcccaagtcaaaaataagcacgttctgttcgccttttctcgaagctttcttatccaaaccataagcaattgcagcagcag 248  Q
    ||||||||||| |||||||| || |  ||||| | |||||| ||||  || |||| |||| |   |||||| ||||||||||||||||| ||||| ||||    
T  5445754 gaaacatcgaatgttccaccaccaagatcaaacacaagcacattcttctcaccttctctccacattttcttgtccaaaccataagcaatagcagctgcag 5445655  T
Q  249 taggctcattaataatcctcaacacattcaaacccgaaatagcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaac 348  Q
    ||||||| || || ||||||| |||||| ||||| | |||    || ||||| || |||||||| |  || || |  ||||| || ||||||||||| |     
T  5445654 taggctcgttgatgatcctcatcacattaaaaccggcaatttttcctgcatcatttgtagcttgtctctgtgagttgttgaagtaggcaggaacagtgat 5445555  T
Q  349 aacagcattcttcactggatgaccaagaaaagcttcagcaacttc 393  Q
    ||||||||| ||||||  |||||| | | ||| ||||||||||||    
T  5445554 aacagcattgttcacttcatgacccaaataagtttcagcaacttc 5445510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 291 - 367
Target Start/End: Original strand, 12234996 - 12235072
Alignment:
Q  291 caccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgga 367  Q
    ||||||||||| | || ||||  |||||||||||||||||||||||||| || |||||||| |||||||| ||||||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactgga 12235072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 12245265 - 12245198
Alignment:
Q  293 ccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    ||||||||| |||| ||||  || ||||||||| | ||||||||||| ||||||||||||||||||||    
T  12245265 ccagcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 7542556 - 7542605
Alignment:
Q  314 cgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 363  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  7542556 cgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcac 7542605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 17648147 - 17648100
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17648147 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 17666789 - 17666742
Alignment:
Q  46 aacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||||| ||||||||||||||||||| |||||| ||||| ||||||||    
T  17666789 aacaaagtgattcaccattctgttattaaaatcctcacctccaagatg 17666742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 16657379 - 16657309
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattctt 360  Q
    |||||||||||| | || ||||  || || ||||||||||| ||||| || ||||||||||||||||||||    
T  16657379 gcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattctt 16657309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 17705878 - 17705797
Alignment:
Q  12 taatatccttcttatttttcctcctaaactccgaaacaaaatgattcaccattctgttatcaaaatcttcaccaccaagatg 93  Q
    |||| |||||||| || || ||| | |||||  ||||||| || |||||||||||||||| |||||| ||||| ||||||||    
T  17705878 taatgtccttcttcttctttctcttgaactcttaaacaaagtggttcaccattctgttattaaaatcctcacctccaagatg 17705797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 4678420 - 4678347
Alignment:
Q  290 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 363  Q
    |||||||||||| | |||||||  ||||||||||||||||| || ||||| |||||||||||  ||||||||||    
T  4678420 gcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcac 4678347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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