View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_low_14 (Length: 400)
Name: NF7920_low_14
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 394
Target Start/End: Complemental strand, 37145117 - 37144742
Alignment:
| Q |
27 |
gattatgggtggttttgaaagaagatgaaaaaacaactccaacctttgcaattcaagnnnnnnnnncaaatgctttattaattgatttggcagattatct |
126 |
Q |
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| T |
37145117 |
gattatgagtggttttgaaagaagatgaaaaaacaactccaacctttgcaattcaagtttttttt-caaatgctttattaattgatttggcagattatct |
37145019 |
T |
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| Q |
127 |
aaaatggaatagaactacaaaatgcacatgagattcttaatgagaccgttgaatctcaacctttcaatctaatccaaagaccaagaagttcacctaaaaa |
226 |
Q |
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| T |
37145018 |
aaaatggaatagaactacaaaatgcacatgagattcttaatgagaccgttgaatctcaacctttcaatctaatccaaagaccaagaagttcacctaaaaa |
37144919 |
T |
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| Q |
227 |
tagnnnnnnnaagaggacctaaaaatagatttctcacttgatatatatgcgagagttataatatcatttcc---------gagagagtcacctcacacac |
317 |
Q |
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| T |
37144918 |
tagttttttttagaggacctaaaaatagatttctcacttgatatatatgcaagagttataatatcatttcctgaaactatgagagagtcacctcacacac |
37144819 |
T |
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| Q |
318 |
atttcattcaacatgatatcgcttatcttgaggttgaaagtggaaactataatcgttcagtcccaaatattcttcga |
394 |
Q |
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| T |
37144818 |
atttcattcaacatgatatcgcttatcttgaggttgaaagtggaaactataatcgttcagtcccaaatattgttcga |
37144742 |
T |
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