View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7920_low_15 (Length: 383)
Name: NF7920_low_15
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 33224771 - 33224587
Alignment:
| Q |
18 |
atggattcaatgttagaaaactgttattatggggaaaattgttgcaacacttaaacaattaagaaatcaatgattaactaatttgaattggcatagttgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33224771 |
atggattcaatgttagaaaactgttattatggggaaaattgttgcaacacttaaacaattaagaaatcaatgattaactaatttgaattggcatagttgt |
33224672 |
T |
|
| Q |
118 |
tggtgtgagacctcgaagtgtacttcttctcaaggtcaaaagttcaattatctcctgtgtcaattttgatggacaagtatataca |
202 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33224671 |
tggtttgagacctcgaagtgtacttcttctcaaggtcaaaagttcaattatctcttgtgtcaattttgatggacaagtatataca |
33224587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 201 - 371
Target Start/End: Complemental strand, 33224555 - 33224385
Alignment:
| Q |
201 |
cacgtagccgaccgagttttcaaaaaataaataaatgaacactgcacttagaactctaaagtgtgttttcacaccaacatgtaagtttgattagcccctg |
300 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33224555 |
cacgtggccggccgagttttcaaaaaataaataaatgaacactgcacttagaactctaaagtgtgttttcacaccaacatgtaagtttgattagcccccg |
33224456 |
T |
|
| Q |
301 |
ccaatctacacacattggatgctagagagtatactagcgaatcctcttcaaaatacttttgaaaccttaat |
371 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33224455 |
ccaatctacacgcattggatgctagagagtatactagcgaatcctcttcaaaatacttttgaaaccttaat |
33224385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 26704598 - 26704634
Alignment:
| Q |
157 |
aagttcaattatctcctgtgtcaattttgatggacaa |
193 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26704598 |
aagttcgattatctcccgtgtcaattttgatggacaa |
26704634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University