View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_low_16 (Length: 372)
Name: NF7920_low_16
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 38850864 - 38850520
Alignment:
| Q |
12 |
tgagatgaattgttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactg |
111 |
Q |
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| T |
38850864 |
tgaggtgaattgttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactg |
38850765 |
T |
|
| Q |
112 |
caactatcatcacaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattg |
211 |
Q |
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| T |
38850764 |
caactatcatcacaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattg |
38850665 |
T |
|
| Q |
212 |
ataatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg-- |
309 |
Q |
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| T |
38850664 |
aaaatcaattggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagttaaggaagtagaagtatacattgtt |
38850565 |
T |
|
| Q |
310 |
nnnnnnngttgagttagttaattagagcttgagggttgttggtat |
354 |
Q |
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| T |
38850564 |
tttttttgttgagttagttaattagagcttgagggttgttggtat |
38850520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 309
Target Start/End: Original strand, 38827290 - 38827576
Alignment:
| Q |
23 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
122 |
Q |
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| T |
38827290 |
gttgtttagggctacgttagaaaaccttaaggcgcaccttatgatcgagtttaaggcaagtgagcaaataagagcacacaatagaactgcaagtatcatc |
38827389 |
T |
|
| Q |
123 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattg |
222 |
Q |
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| T |
38827390 |
acaacatttgcatcaaattcacgaattccaaaatatgagttagttgaattatggttgtgtgtgagaacaggggagctggttggtgattgataatcaattg |
38827489 |
T |
|
| Q |
223 |
gattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg |
309 |
Q |
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| T |
38827490 |
gattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagttgtgaagtaaaagaagtagaagcatacattg |
38827576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 23 - 307
Target Start/End: Original strand, 38841075 - 38841359
Alignment:
| Q |
23 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
122 |
Q |
| |
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|||||| |||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
38841075 |
gttgttgatggctacgtttgaaaaccttaaggcacacctgataatggagtttaatgcaagtgagcaaataaaaacacataatatgactgcaagtatcatc |
38841174 |
T |
|
| Q |
123 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattg |
222 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||| ||||| ||||||||| ||||| || |
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| T |
38841175 |
acaacttttgaatcaaattcacgatctccaaaatttgagtctgttgaattatggttgtttgttaaagtaggggagttggttagtgattgatgatcaactg |
38841274 |
T |
|
| Q |
223 |
gattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacat |
307 |
Q |
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| T |
38841275 |
ggttttgaatgagtaaccttcttatgtgagattccacaagaagctcattgaatatttgtgtagtaaaggaaatagaagcatacat |
38841359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 23 - 302
Target Start/End: Original strand, 38865121 - 38865403
Alignment:
| Q |
23 |
gttgtttatggctacgtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatc |
122 |
Q |
| |
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||||| || ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||| |
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| T |
38865121 |
gttgtgtagggctacgttagaaaaccttaaaccacaccttatgatggagtttaatgcaagtgagcaaataagagcacacaataaaactgcaagtatcatt |
38865220 |
T |
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| Q |
123 |
acaacatttgaatcaaattcacgagctccaaaatttgagtctgttgaatt---gtgattgtttgttaacacaggggagctggttggtgattgataatcaa |
219 |
Q |
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| |||||||||||| ||||||||||||||||||| ||||||||||||||| || ||| |||||||| ||| ||||| | ||| ||||||||| |||| |
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| T |
38865221 |
ataacatttgaatcgaattcacgagctccaaaatatgagtctgttgaattatggttattatttgttaaaacatgggagttagttagtgattgatgttcaa |
38865320 |
T |
|
| Q |
220 |
ttggattttggaagagtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagca |
302 |
Q |
| |
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|||| | ||| |||||||||||||||||||| ||||| |||||||||||||||| |||| |||||||||| |||||||||||| |
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| T |
38865321 |
ttgggtcttgaaagagtaaccttcttgtgtgagattccacaagaagctcatggacgagttgtgaagtaaaggaagtagaagca |
38865403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 38 - 307
Target Start/End: Original strand, 38858822 - 38859094
Alignment:
| Q |
38 |
gtttgaaacccttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatca |
137 |
Q |
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| T |
38858822 |
gtttgaaatccttaagaaacaccttatgatggagtttaatacaagtaaacaaataaaagcacataatagaactgcaattatcatcacaacatctgaatca |
38858921 |
T |
|
| Q |
138 |
aattcacgagctccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggtt---ggtgattgataatcaattggattttggaaga |
234 |
Q |
| |
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|||||||||||||| || |||||||| |||||||||| ||||| || || ||||||| | || || ||||||||| ||||| ||| ||||| | || |
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| T |
38858922 |
aattcacgagctccgaactttgagtcggttgaattgttgttgttcgtgaaaacaggggggttgattttaagtgattgatgatcaactgggttttgaatga |
38859021 |
T |
|
| Q |
235 |
gtaaccttcttgtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacat |
307 |
Q |
| |
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| T |
38859022 |
gtaaccttcttgtgtgagattccacaagaagctcatgtagaagtggtgaagtaaaagaagtagaagcatacat |
38859094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 49 - 309
Target Start/End: Original strand, 38861716 - 38861979
Alignment:
| Q |
49 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagc |
148 |
Q |
| |
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||||||||| ||||||||| ||||||||||||| | | ||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |
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| T |
38861716 |
ttaaggcacgccttatgataaagtttaatgcaaggggaccaataaaagcacataatacaactgcaagtatcatcacaacatttgaatcaaattcaggagc |
38861815 |
T |
|
| Q |
149 |
tccaaaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggtt---ggtgattgataatcaattggattttggaagagtaaccttctt |
245 |
Q |
| |
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|| ||||| |||||| ||||||||||| | ||||| || | | ||||| || || ||||||||| ||||| ||| ||||| | ||||||||||||| |
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| T |
38861816 |
tctaaaatatgagtcggttgaattgtggctatttgtgaaaatacgggagttgattttaagtgattgatgatcaactgggttttgaatgagtaaccttctt |
38861915 |
T |
|
| Q |
246 |
gtgtgtgattctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg |
309 |
Q |
| |
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||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
38861916 |
gtgtgagattccacaagaagttcatggagaagtggtgaagtaaaggaagtagaagcatacattg |
38861979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 53 - 309
Target Start/End: Original strand, 38846919 - 38847154
Alignment:
| Q |
53 |
ggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaattcacgagctcca |
152 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| |||||| |||||||| | ||||||||||||||||||||| ||||| |||||||||||| |
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| T |
38846919 |
ggcacaccttacaatggagtttaatgcaattgagcaaataatagcacacaataggacagaaactatcatcacaacatttgattcaaactcacgagctcca |
38847018 |
T |
|
| Q |
153 |
aaatttgagtctgttgaattgtgattgtttgttaacacaggggagctggttggtgattgataatcaattggattttggaagagtaaccttcttgtgtgtg |
252 |
Q |
| |
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|||| |||| |||||||||| ||||| ||| || ||||| ||||| ||| |||||||||||||||||||||||||||| |
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| T |
38847019 |
aaatacgagttagttgaattgttattgtgtgtgaa---------------------ttgatgatcaactgggttttggaagagtaaccttcttgtgtgtg |
38847097 |
T |
|
| Q |
253 |
attctacaagaagctcatggaggagtggtgaagtaaaagaagtagaagcatacattg |
309 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
38847098 |
attctacaagaagctcatggaggagttgtgaagtaaaagaagtagaagcatacattg |
38847154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 350
Target Start/End: Original strand, 38827599 - 38827628
Alignment:
| Q |
321 |
agttagttaattagagcttgagggttgttg |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
38827599 |
agttagttaattagagcttgagggttgttg |
38827628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 43666311 - 43666401
Alignment:
| Q |
49 |
ttaaggcacaccttatgatggagtttaatgcaagtgagcaaataaaagcacataataggactgcaactatcatcacaacatttgaatcaaa |
139 |
Q |
| |
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|||| |||||||||||||| ||||| || |||||| ||||||| ||||||||||||||| | | || ||| |||||||||| |||||| |
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| T |
43666311 |
ttaatgcacaccttatgattgagttcaaacaaagtgaacaaataagagcacataataggacagagagtaccataacaacatttgcatcaaa |
43666401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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