View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_low_18 (Length: 311)
Name: NF7920_low_18
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 31725534 - 31725809
Alignment:
| Q |
18 |
aatgttagggagtgagatgatggcattagatgaacccaaggagccaggttctattacgaggaaagaatctgttgaagcaaattcaagctcaagtgggagg |
117 |
Q |
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| T |
31725534 |
aatgttagggagtgagatgatggcattagatgaacccaaggagccaggttctattacgaggaaagaatctgttgaagcaaattcaagctcaagtgggaag |
31725633 |
T |
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| Q |
118 |
gatacaagttcaaactatgaaatgacaatgagctcttttagtgctcggtg-aaaatcaataagataccggtacatatttcagtaaaggaggtataattcc |
216 |
Q |
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| T |
31725634 |
gatacaagttcaaactatgaaatgacaatgagctcttttagtgctcggtgaaaaatcaataagataccggtacatatttcagtaaaggaggtataattcc |
31725733 |
T |
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| Q |
217 |
atggggaacaaagtcactactaaagtactagtgttcaaatacttttgtacttgaatgtttaaagtgaatttggtta |
292 |
Q |
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| T |
31725734 |
atggggaacaaagtcactactaaagtactagtgttcaaatacttttgtacttgaatgtttaaagtgaatttggtta |
31725809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 31718310 - 31718579
Alignment:
| Q |
18 |
aatgttagggagtgagatgatggcattagatgaacccaaggagccaggttctattacgaggaaagaatctgttgaagcaaattcaagctcaagtgggagg |
117 |
Q |
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|||||||||||||||||||||| |||||||||| || ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
31718310 |
aatgttagggagtgagatgatgacattagatgagcctaaggagccaggttttactacgaggaaagaatctgctgaagcaaattcaagctcaagtgggaag |
31718409 |
T |
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| Q |
118 |
gatacaagttcaaactatgaaatgacaatgagctcttttagtgctcggtgaaaatcaataagataccggtacatatttcagtaaaggaggtataattcca |
217 |
Q |
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| T |
31718410 |
gatacaagttcaaactatgaaatgacaatgagctcttttagtgctcggtgaaaatcaataggatactggtacgtatttcagtaaaggaggtataattcca |
31718509 |
T |
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| Q |
218 |
tggggaacaaagtcactactaaagtactagtgttcaaatacttttgtacttgaatgtttaaagtgaattt |
287 |
Q |
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| T |
31718510 |
tggggaacaaagtcactagtaaagtactagtgttcaaatacttttgtacttgaatgtttaaagtaaattt |
31718579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 31702981 - 31703256
Alignment:
| Q |
18 |
aatgttagggagtgagatgatggcattagatgaacccaaggagccaggttctattacgaggaaagaatctgttgaagcaaattcaagctcaagtgggagg |
117 |
Q |
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| T |
31702981 |
aatgttagggagtgagatgatgacattagatgagcctaaggagccaggttttattatgaggaaagaatctgttgaaaaaaattcaagctcaagtgggagg |
31703080 |
T |
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| Q |
118 |
gatacaagttcaaactatgaaatgacaatgagctcttttagtgctcggtgaaaatcaataagataccggtacatatttcagtaaaggaggtataattcca |
217 |
Q |
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| T |
31703081 |
gatacaagttcaaactatgaaatgacaatgagctcttttattgctcggtgaaaatcaataagataccggtacatatttcagtaaaggatgtataattcca |
31703180 |
T |
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| Q |
218 |
tggggaacaaagtcactactaaagtactagtgttcaaatacttttgtacttgaatgtt--taaagtgaatttggtt |
291 |
Q |
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| T |
31703181 |
tggggaacaaagtcactattgaagtactagtgttcaaatacttttgtacttgaatgtttataaagtaaatttggtt |
31703256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 31693238 - 31693368
Alignment:
| Q |
18 |
aatgttagggagtgagatgatggcattagatgaacccaaggagccaggttctattacgaggaaagaatctgttgaagcaaattcaagctcaagtgggagg |
117 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31693238 |
aatgttagggagtgagatgatggcattagatgagcctaaggagccaggttttattatgaggaaagaatctgttgaagcaaattcaagctcaagtgggaag |
31693337 |
T |
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| Q |
118 |
gatacaagttcaaactatgaaatgacaatga |
148 |
Q |
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| T |
31693338 |
gatataggttaaaactatgagatgaccatga |
31693368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 266
Target Start/End: Original strand, 14873654 - 14873772
Alignment:
| Q |
148 |
agctcttttagtgctcggtgaaaatcaataagataccggtacatatttcagtaaaggaggtataattccatggggaacaaagtcactactaaagtactag |
247 |
Q |
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| T |
14873654 |
agctctttaagtgtttggtgaaaattaataagatagttgtacatattgcagtaaacgaagtataaatccatggcaaacaaagtcactattacaggactag |
14873753 |
T |
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| Q |
248 |
tgttcaaatacttttgtac |
266 |
Q |
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| T |
14873754 |
tgttcaaatacatttgtac |
14873772 |
T |
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