View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_low_26 (Length: 258)

Name: NF7920_low_26
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_low_26
NF7920_low_26
[»] chr8 (4 HSPs)
chr8 (2-179)||(30634107-30634284)
chr8 (1-54)||(1175167-1175220)
chr8 (211-258)||(30633954-30633999)
chr8 (1-44)||(35673345-35673388)
[»] chr1 (2 HSPs)
chr1 (1-54)||(44782186-44782239)
chr1 (1-46)||(46679756-46679801)
[»] chr5 (5 HSPs)
chr5 (1-46)||(10410852-10410897)
chr5 (1-46)||(8081556-8081601)
chr5 (1-46)||(25725819-25725864)
chr5 (2-46)||(25506949-25506993)
chr5 (1-57)||(40382757-40382813)
[»] chr4 (2 HSPs)
chr4 (2-54)||(4847691-4847743)
chr4 (1-46)||(28395564-28395609)
[»] chr3 (1 HSPs)
chr3 (2-46)||(41874565-41874609)
[»] chr2 (5 HSPs)
chr2 (1-59)||(45035209-45035267)
chr2 (1-46)||(1015775-1015820)
chr2 (1-46)||(14007793-14007838)
chr2 (1-46)||(17308741-17308786)
chr2 (1-42)||(45033414-45033455)
[»] chr7 (2 HSPs)
chr7 (1-46)||(29924684-29924729)
chr7 (1-46)||(21464566-21464611)
[»] chr6 (1 HSPs)
chr6 (1-46)||(15689088-15689133)


Alignment Details
Target: chr8 (Bit Score: 154; Significance: 9e-82; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 30634284 - 30634107
Alignment:
Q  2 aatctatctttccattgcattttacctagaaccatagaatcctttaactcatatcagaagatactctaactcatgcaatattgttaaatttatgctactt 101  Q
    |||||||||||||||||||||| ||||| |||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  30634284 aatctatctttccattgcatttgacctaaaaccatagaatcctttgattcataacagaagatactctaactcatgcaatattgttaaatttatgctgctt 30634185  T
Q  102 acaatagccaaaatgtattattacgtaacattcagggaaattaaatagaaaactgacatagctaaagtgtaatatcac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30634184 acaatagccaaaatgtattattacgtaacattcagggaaattaaatagaaaactgacatagctaaagtgtaatatcac 30634107  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1175167 - 1175220
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatcctttaactcata 54  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||| |||||    
T  1175167 caatctatcttttcattacatttgacctagaaccatagaatcctttaattcata 1175220  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 30633999 - 30633954
Alignment:
Q  211 gtgtttttctttcttttgctttaatccttacctctgtactcatttttc 258  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||    
T  30633999 gtgtttttctttcttttgctttaatccttac--ctgtactcatttttc 30633954  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35673388 - 35673345
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatcct 44  Q
    ||||||||||||||||||||||| || ||||||||| |||||||    
T  35673388 caatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44782239 - 44782186
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatcctttaactcata 54  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| |||||    
T  44782239 caatctatctttccattgcatttgacctagaaccatggaatcctttaattcata 44782186  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 46679756 - 46679801
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  46679756 caatctatctttccattgcatttgatctagaaccatggaatccttt 46679801  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10410852 - 10410897
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||    
T  10410852 caatctatctttccattgcatttgacctagaaccatggaatccttt 10410897  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8081556 - 8081601
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| |||||||||||| ||| |||||    
T  8081556 caatctatctttccattgcatttgacctagaaccatggaacccttt 8081601  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25725864 - 25725819
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  25725864 caatctatctttccattgcatttgatctagaaccatggaatccttt 25725819  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 25506993 - 25506949
Alignment:
Q  2 aatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    |||||||||||||||||||||| | ||| |||||| |||||||||    
T  25506993 aatctatctttccattgcatttgatctaaaaccatggaatccttt 25506949  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40382813 - 40382757
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatcctttaactcatatca 57  Q
    |||| |||||||||||||||||| ||||||||| ||  |||||||| | ||||||||    
T  40382813 caatttatctttccattgcatttgacctagaacaatgtaatcctttgattcatatca 40382757  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 4847743 - 4847691
Alignment:
Q  2 aatctatctttccattgcattttacctagaaccatagaatcctttaactcata 54  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||| |||||    
T  4847743 aatctatctttccattacatttgacctagaaccatggaatcctttaattcata 4847691  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 28395609 - 28395564
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| ||||| |||||| |||||||||    
T  28395609 caatctatctttccattgcatttgacctaaaaccatggaatccttt 28395564  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 41874565 - 41874609
Alignment:
Q  2 aatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    |||||||||||||||||||||| |||||||||||| |||||||||    
T  41874565 aatctatctttccattgcatttgacctagaaccatggaatccttt 41874609  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45035209 - 45035267
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatcctttaactcatatcaga 59  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||| | ||||| ||||    
T  45035209 caatctatctttccattgcatttgatctagaaccatggaatcctttgattcataacaga 45035267  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1015775 - 1015820
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| | |||||||||| |||||||||    
T  1015775 caatctatctttccattgcatttgatctagaaccatggaatccttt 1015820  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14007793 - 14007838
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||    
T  14007793 caatccatctttccattgcatttgacctagaaccatggaatccttt 14007838  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17308741 - 17308786
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| | ||||||| || |||||||||    
T  17308741 caatctatctttccattgcatttgatctagaacaatggaatccttt 17308786  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45033414 - 45033455
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatc 42  Q
    ||||||||||||||||||||||| | |||||||||| |||||    
T  45033414 caatctatctttccattgcatttgatctagaaccatggaatc 45033455  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29924684 - 29924729
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||    
T  29924684 caatctatctttccattgcatttgacctagaactatggaatccttt 29924729  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21464566 - 21464611
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| | |||||||||| |||| ||||    
T  21464566 caatctatctttccattgcatttgatctagaaccatggaattcttt 21464611  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 15689088 - 15689133
Alignment:
Q  1 caatctatctttccattgcattttacctagaaccatagaatccttt 46  Q
    ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  15689088 caatctatctttccattgcatttgacctagaatcatggaatccttt 15689133  T

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