View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_low_28 (Length: 256)
Name: NF7920_low_28
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 33697860 - 33698084
Alignment:
| Q |
16 |
ctcttttctgtctcgctggtgttagggttgtt-tgttcaagtgtgagtagttatatcctacgtcgactattaattgccaaaacgttaaatacgagaagtg |
114 |
Q |
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| T |
33697860 |
ctcttttctgtctcgttggtgttagggttgttctgttcaagtgtgagtagttatatcccatgtcgactattaattgccaaaacgttaaatacgagaagtg |
33697959 |
T |
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| Q |
115 |
gttaatatacatgatgttttaaggtttttggtagaggtagcatctcctctctgttgtcgtactagagcattggtttgttgttgtttctaacgctcctcag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33697960 |
gttaatatacatgatgttttaaggtttttggtagaggtagcatctcctctctgttgtcgtactagagcattggtttgttgttgtttctaacgctcctcag |
33698059 |
T |
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| Q |
215 |
acccttcaacaagtggtatcagaac |
239 |
Q |
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| T |
33698060 |
acccttcaacaggtggtatcagaac |
33698084 |
T |
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