View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7920_low_29 (Length: 253)

Name: NF7920_low_29
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7920_low_29
NF7920_low_29
[»] chr1 (2 HSPs)
chr1 (19-242)||(20188258-20188481)
chr1 (28-218)||(51091591-51091788)
[»] chr3 (2 HSPs)
chr3 (19-242)||(15214224-15214447)
chr3 (19-242)||(15253443-15253666)
[»] chr7 (1 HSPs)
chr7 (19-242)||(45621930-45622153)
[»] chr8 (1 HSPs)
chr8 (19-242)||(22603451-22603673)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 20188481 - 20188258
Alignment:
Q  19 atctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20188481 atctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 20188382  T
Q  119 tagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20188381 tagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 20188282  T
Q  219 gctattggtgggttgtttcttcat 242  Q
    |||||||||||| |||||||||||    
T  20188281 gctattggtggggtgtttcttcat 20188258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 51091788 - 51091591
Alignment:
Q  28 tctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaac-ataataggaaagaaatgaaggatataatagaaaca 126  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||| |||   | ||||| ||  ||||||||||||||||| |||||||||||||||||    
T  51091788 tctaggtcactcctcccccacaataatgaaggcaaaatttgaagaaaaaaaaatggttgataaatataataggaaagaaatgtaggatataatagaaaca 51091689  T
Q  127 atgcataaatataaaatcactaaagaattgtttattgcagtgaaactga----aatcaaaagaaaaatgcatgcacc--atggaacattcaggaaacc 218  Q
    ||  || |||||||||||||||||||||||||||||||| |||||||||    ||| ||||||||||||||||||||  | |||||||||| ||||||    
T  51091688 attgatgaatataaaatcactaaagaattgtttattgcactgaaactgaaattaattaaaagaaaaatgcatgcaccttaaggaacattcatgaaacc 51091591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 15214224 - 15214447
Alignment:
Q  19 atctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15214224 atctcactatccaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 15214323  T
Q  119 tagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15214324 tagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaatc 15214423  T
Q  219 gctattggtgggttgtttcttcat 242  Q
    |||||||||||||| |||||||||    
T  15214424 gctattggtgggttatttcttcat 15214447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 15253443 - 15253666
Alignment:
Q  19 atctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15253443 atctcactatccaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 15253542  T
Q  119 tagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15253543 tagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaatc 15253642  T
Q  219 gctattggtgggttgtttcttcat 242  Q
    |||||||||||||| |||||||||    
T  15253643 gctattggtgggttatttcttcat 15253666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 45622153 - 45621930
Alignment:
Q  19 atctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622153 atctcactatctaggccacgcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 45622054  T
Q  119 tagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 218  Q
    ||||||||||| ||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622053 tagaaacaatggataaatataaattcgctaaagagttgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 45621954  T
Q  219 gctattggtgggttgtttcttcat 242  Q
    ||||||||||||||||||||||||    
T  45621953 gctattggtgggttgtttcttcat 45621930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 22603673 - 22603451
Alignment:
Q  19 atctcactatctaggccactcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22603673 atctcactatctaggccacgcctcccctacaataatgaaggcaaaa-ttgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataa 22603575  T
Q  119 tagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaacc 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||    
T  22603574 tagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaacaaaaatcaaaagaaaaatgcatgcaccatggaacactcaggaaacc 22603475  T
Q  219 gctattggtgggttgtttcttcat 242  Q
    ||||||||||||||||||||||||    
T  22603474 gctattggtgggttgtttcttcat 22603451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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