View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_low_3 (Length: 565)
Name: NF7920_low_3
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 34526129 - 34526338
Alignment:
| Q |
16 |
atgaatgtacatgggaaggagaagagtcccatccttattctcagtgaagaaccgtacaaacagcttaataagatatacaaggttttaaataacggtcgcg |
115 |
Q |
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| T |
34526129 |
atgaatgtacatgggaaggagaagagtcccatccttattctcagtgaagaatcgtacaaacagtttaataagatatacaaggttttaaataacggtcgcg |
34526228 |
T |
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| Q |
116 |
gtggtgtataagattttgcatttcagctgttaaagattttgcgttgcggattgcagttgtcgcggtgtaaattaatcacaacatattacatatgtttgca |
215 |
Q |
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| T |
34526229 |
gtggtgtataagattttgcatttcggctgttaaaatttttgcgttgcg------------------gtgaattaatcacaac--attacatatgtttgca |
34526308 |
T |
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| Q |
216 |
tgggagaagaagatagaataaaaggtatca |
245 |
Q |
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| T |
34526309 |
tgggagaagaagatagaataaaaggtatca |
34526338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 358 - 460
Target Start/End: Original strand, 34526372 - 34526467
Alignment:
| Q |
358 |
atgattggtaattgtgcgacgtagttactacaacaaattcattttcggctgaaattgaatttactatatgccaatagccagagactaatcattcaaaata |
457 |
Q |
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| T |
34526372 |
atgattggtaattgtgcgacgtagttactacaacaaattcattttcggctgaaattgaatttactatat-------gtcagagactaatcattcaaaata |
34526464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 494 - 547
Target Start/End: Original strand, 34526467 - 34526520
Alignment:
| Q |
494 |
gtgctcttccaatcacagtgttcaagggtcgagctcctaaccacatggttaagg |
547 |
Q |
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| T |
34526467 |
gtgctcttccaatcacattgttcaagggtcgagctcctaaccacatgtttaagg |
34526520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 32617559 - 32617595
Alignment:
| Q |
163 |
ggattgcagttgtcgcggtgtaaattaatcacaacat |
199 |
Q |
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| T |
32617559 |
ggattgcggttgtcgcggtgtaaattaatcacaacat |
32617595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 26828687 - 26828612
Alignment:
| Q |
125 |
aagattttgc-atttcagctgttaaagattttgcgttgcggattgcagttgtcgcggtgtaaattaatcacaacat |
199 |
Q |
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| T |
26828687 |
aagattttgcgatttcagttgttatagatgttgcattacagattgttattgtcgcggtgtaaattaatcacaacat |
26828612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 12990695 - 12990659
Alignment:
| Q |
163 |
ggattgcagttgtcgcggtgtaaattaatcacaacat |
199 |
Q |
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| T |
12990695 |
ggattgcagttgtcgcggtgtgaattagtcacaacat |
12990659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 11440815 - 11440712
Alignment:
| Q |
97 |
gttttaaataacggtcgcggtggtgtataagattttgc-atttcagctgttaaagattttgcgttgcggattgcagttgtcgcggtgtaaattaatcaca |
195 |
Q |
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| T |
11440815 |
gttttaaataacggttgcggtcgtggatatgatttcacgatttcggctgttacgaatgttgcgttatggattgttgttgtcgcggtgtgaattaatcaca |
11440716 |
T |
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| Q |
196 |
acat |
199 |
Q |
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|||| |
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| T |
11440715 |
acat |
11440712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 25968181 - 25968144
Alignment:
| Q |
162 |
cggattgcagttgtcgcggtgtaaattaatcacaacat |
199 |
Q |
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| T |
25968181 |
cggattgcggttgtcgcggtgtgaattaatcacaacat |
25968144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 13402264 - 13402227
Alignment:
| Q |
162 |
cggattgcagttgtcgcggtgtaaattaatcacaacat |
199 |
Q |
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| T |
13402264 |
cggattgcggttgtcgcggtgtgaattaatcacaacat |
13402227 |
T |
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