View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7920_low_6 (Length: 501)
Name: NF7920_low_6
Description: NF7920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7920_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 23 - 485
Target Start/End: Original strand, 28189438 - 28189894
Alignment:
| Q |
23 |
ataaacaagggcgaagtgctatgaaggataattcattcatcatgaaaaattgatgtaaatgtgttttgaaactacgttgaaaataacaaaattgaatttc |
122 |
Q |
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| T |
28189438 |
ataaacaagggcgaagtgctatgaaggataattcattcatcatgaaaaattgatgtaaatgtgttttgaaactatgttgaaaataacaaaattgaatttc |
28189537 |
T |
|
| Q |
123 |
atgtctctattttttatttcctttatttaagcattacttttgtcaaaaatggtttattcaacctttgtttgaagggtggtttattaaggcttattgcttt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28189538 |
atgtctctattttttatttcctttatttaagcattacttttgtcaaaaatggtttattcaacctttgtttgaagggtggtttattaaggcttattgcttt |
28189637 |
T |
|
| Q |
223 |
gttttggttggttggtagtgatgttaaatcaagttatttaaaatgacatgacattgtatgtttaaaaatgtaacggtgcgtataattgaagtttatttta |
322 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
28189638 |
gtt----ttggttggtagtgatgttaaatcaagttatttaaaatgacatgaaattgtatgtataaaaatgtaacggtgcgtataattgaagttta-ttta |
28189732 |
T |
|
| Q |
323 |
gatatagtctgatggttataaatccttttattttcaagagtattc-nnnnnnnnnnnnnnngtgtttgtcatatactgaagattttacttcaaatttaaa |
421 |
Q |
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| T |
28189733 |
gatatagtgtgatggttataaatccttttattttca--agtattcttttttttctttttttgtgtttgtcatatactgaagattttacttcaaatttaaa |
28189830 |
T |
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| Q |
422 |
acaatttaagatatgtatattatagagtccaaaaaatatgagtcttaacattttagtggttcat |
485 |
Q |
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| T |
28189831 |
acaatttaagatatgtatattatagagtccaaaaaatatgagtcttaacattttagtggttcat |
28189894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 19540763 - 19540683
Alignment:
| Q |
212 |
cttattgctttgttttggttggttggtagtgatgttaaatcaagttatttaaaatgacatgacattgtatgtttaaaaatg |
292 |
Q |
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||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||| || ||||||||||||||||||| |
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| T |
19540763 |
cttattgctttgttttggttggttggtagtggtattaagccaaattatttaaaatgacgtggcattgtatgtttaaaaatg |
19540683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 18476128 - 18476184
Alignment:
| Q |
212 |
cttattgctttgttttggttggttggtagtgatgttaaatcaagttatttaaaatga |
268 |
Q |
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| T |
18476128 |
cttattgctttgttttggttggttggtagtggtgttaaaccaaattatttaaaatga |
18476184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 18476007 - 18476130
Alignment:
| Q |
62 |
tcatgaaaaattgatgtaaatgtgttttgaaactacgttgaaaataacaaaattgaatttcatgtctctattttttatttcctttatttaagcattactt |
161 |
Q |
| |
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||||| ||| ||||||||||||| || |||||||| |||||| ||| ||||| ||||| ||||||||||||| |||||| |||||| | |||| || |
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| T |
18476007 |
tcatggaaatttgatgtaaatgtcttctgaaactatgttgaa--taataaaatagaattacatgtctctatttcttatttaatttattccaacattcctc |
18476104 |
T |
|
| Q |
162 |
ttgtcaaaaatggtttattcaacctt |
187 |
Q |
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||| |||| ||||||| |||||||| |
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| T |
18476105 |
ttggaaaaattggtttaatcaacctt |
18476130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 24886818 - 24886888
Alignment:
| Q |
62 |
tcatgaaaaattgatgtaaatgtgttttgaaactacgttgaaaataacaaaattgaatttcatgtctctattt |
134 |
Q |
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||||| ||| |||||||||||||||| | ||||| |||||| ||| ||||| ||||||||||||||||||| |
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| T |
24886818 |
tcatggaaatttgatgtaaatgtgttctaaaactttgttgaa--taataaaatcgaatttcatgtctctattt |
24886888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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