View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_high_2 (Length: 532)
Name: NF7921_high_2
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 7500546 - 7500243
Alignment:
| Q |
19 |
attacatagcattagaaaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagctacatta |
118 |
Q |
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| T |
7500546 |
attacatagcataacaaaaagattgaaggttgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagctacatta |
7500447 |
T |
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| Q |
119 |
gtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaacaacttattatttt |
218 |
Q |
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| T |
7500446 |
gtgctaagcaaacttcatgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacatagatagaaacatatgcataaaaaacaacttattatttt |
7500347 |
T |
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| Q |
219 |
aatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttcatagctactccaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7500346 |
aatacacaacatataagtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttcatagctactccaa |
7500247 |
T |
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| Q |
319 |
ccgc |
322 |
Q |
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|||| |
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| T |
7500246 |
ccgc |
7500243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 35 - 322
Target Start/End: Complemental strand, 15171749 - 15171463
Alignment:
| Q |
35 |
aaaagattgaagattgaaggttcttattaaaatacacatgagtgcctaacagtagttcttattctaattaatacagctacattagtgctaagcaaacttc |
134 |
Q |
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|||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
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| T |
15171749 |
aaaagattgaggattgaaggtttttattgaaatacac--gagtgcctaacagtagttcttattctaatcaatacagcctcatcagtgctaagcaaacttc |
15171652 |
T |
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| Q |
135 |
atgaaacagaaaccttcaacttctgtaccaaacaagcctaaaacat-agatagaaacatatgcataaaaaacaacttattattttaatacacaacatata |
233 |
Q |
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||||||| ||||||||||||||||| |||||||||| | |||| | ||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
15171651 |
ctgaaacataaaccttcaacttctgtgccaaacaagcatgaaaccttagatagaaacatatgcataaataacagcttattattttaatacacaacatata |
15171552 |
T |
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| Q |
234 |
agtagggaacccccttgaaagttaagacacaaatcacacattcctacgcatcttcagaactctccttccttcatagctactccaaccgc |
322 |
Q |
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||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
15171551 |
agtagtgaaccctcttgaaagttaagacacaaatcacacactcctacgcatcttcagaactcttcttccatcaaagctactccaaccgc |
15171463 |
T |
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