View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7921_high_3 (Length: 395)
Name: NF7921_high_3
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7921_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 9313480 - 9313741
Alignment:
| Q |
1 |
catttttgtgttccacttccatattgcgttgaaacatatattttgcactaatttatttacctccatagatatagtcattcataagttttactgggcaact |
100 |
Q |
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| T |
9313480 |
cattttcgtgttccacttccatattgcattgaagcatatattttgcactaatttatttacctccatagatatagtcattcataagttttactgagcaact |
9313579 |
T |
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| Q |
101 |
tgcggaaaccaatattcctctccatttcagaatcttccttctttcaattgattctggatccaagcttattctagtatggttttgcaaatctggcgtgcat |
200 |
Q |
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| T |
9313580 |
tgcggaaaccaatattcctctccatttcagaatcttcattctttcaattgattctggatccaagcttattctagtatggttttgcaaatctggcgtgcat |
9313679 |
T |
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| Q |
201 |
tcaataattttggaacttatccttcgttgtgtttttcattacccagtcgatctttgtaacca |
262 |
Q |
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| T |
9313680 |
tcaataattttggaacttatccttcgttgtgtttttcattacccagtcgatctttgtaacca |
9313741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 260 - 357
Target Start/End: Original strand, 9313886 - 9313983
Alignment:
| Q |
260 |
ccacaatttttaaactaacaaacactagaaaacttcacaattccagtttgccataatccttgccaacaaccatatctattgcaccctctacgtccttg |
357 |
Q |
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| T |
9313886 |
ccacaatttttaaactaaccaacactagaaaacttcacaattccagtttgccataatccttgccaacaaccaaatctattgcaccctctacgtccttg |
9313983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 9289025 - 9289157
Alignment:
| Q |
130 |
gaatcttccttctttcaattgattctggatccaagcttattctagtatggttttgcaaatctggcgtgcattcaataattttggaacttatccttcgttg |
229 |
Q |
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| T |
9289025 |
gaatcttccttcgatcaattgattctggatctgagcttattcttgtatggttttgcaaatctggcgtgcattcaataactttggaacttatccttcattg |
9289124 |
T |
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| Q |
230 |
tgtttttcattacccagtcgatctttgtaacca |
262 |
Q |
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| T |
9289125 |
tgtttttcattacgtagtcaatatttgtaacca |
9289157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 77 - 262
Target Start/End: Complemental strand, 9076236 - 9076044
Alignment:
| Q |
77 |
attcataagttttactgggcaacttgcggaaaccaatattcctctccatttcagaatcttccttctttcaattgattctggatccaagcttattctagta |
176 |
Q |
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| T |
9076236 |
attcacaagtttttctagccaactcggggaaaccaatatctctctccattcaacaatcttctttctttcaattgattatggatctaagcttatttttgta |
9076137 |
T |
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| Q |
177 |
tggttttgcaaatctggcgtgcattca-------ataattttggaacttatccttcgttgtgtttttcattacccagtcgatctttgtaacca |
262 |
Q |
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| T |
9076136 |
tggttttgcaaatttggtgtttattcaataaaatataattttggaacttatccttcgttgtatttttcattacctagtcaatctttataacca |
9076044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 172
Target Start/End: Complemental strand, 9064138 - 9064043
Alignment:
| Q |
77 |
attcataagttttactgggcaacttgcggaaaccaatattcctctccatttcagaatcttccttctttcaattgattctggatccaagcttattct |
172 |
Q |
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| T |
9064138 |
attcacaagtttttctagccaactcggggaaaccgatattcctctccatttcagaatcttctttctttcatttgattatggatctaagctgattct |
9064043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9288914 - 9288994
Alignment:
| Q |
1 |
catttttgtgttccacttccatattgcgttgaaacatatattt-tgcactaatttatttacctccat-agatatagtcatt |
79 |
Q |
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| T |
9288914 |
cattttcgtgttccacttccatattgcattgaagcatatgtttgtgcactaatttattcacctctataaaatatagtcatt |
9288994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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