View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7921_low_1 (Length: 549)

Name: NF7921_low_1
Description: NF7921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7921_low_1
NF7921_low_1
[»] chr4 (10 HSPs)
chr4 (102-309)||(27074673-27074880)
chr4 (102-309)||(27154766-27154973)
chr4 (467-524)||(27074418-27074475)
chr4 (467-524)||(27154509-27154566)
chr4 (12-59)||(27074880-27074927)
chr4 (12-59)||(27154973-27155020)
chr4 (405-474)||(27074509-27074577)
chr4 (405-474)||(27154600-27154668)
chr4 (407-464)||(6800180-6800237)
chr4 (407-459)||(6804622-6804674)
[»] chr5 (2 HSPs)
chr5 (407-464)||(41361468-41361525)
chr5 (467-524)||(34154038-34154095)
[»] chr3 (1 HSPs)
chr3 (401-456)||(53833662-53833717)
[»] chr1 (1 HSPs)
chr1 (467-511)||(2114951-2114995)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 102 - 309
Target Start/End: Complemental strand, 27074880 - 27074673
Alignment:
Q  102 ggttcctaaattacagtccatgcagtcatataaaataaatactttataaagttagaaagaacaaggtgaaatgcatacctaaatttcgtattcacagttg 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27074880 ggttcctaaattacagtccatgcaatcatataaaataaatactttataaagttagaaagaacaaggtgaaatccatacctaaatttcgtattcacagttg 27074781  T
Q  202 tttgtacaaggggaggttcgtttcacatctctctaagaactagggaagataggcagaattcacactcctcatttgcacctatggaaagtggtaatgatac 301  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27074780 tttgtacaagaggaggttcgtttcacatctctctaagaactagggaagataggcagaattcacactcctcatttgcacctatggaaagtggtaatgatac 27074681  T
Q  302 gctcgtgc 309  Q
    ||||||||    
T  27074680 gctcgtgc 27074673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 102 - 309
Target Start/End: Complemental strand, 27154973 - 27154766
Alignment:
Q  102 ggttcctaaattacagtccatgcagtcatataaaataaatactttataaagttagaaagaacaaggtgaaatgcatacctaaatttcgtattcacagttg 201  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27154973 ggttcctaaattacagtccatgcaatcatataaaataaatactttataaagttagaaagaacaaggtgaaatccatacctaaatttcgtattcacagttg 27154874  T
Q  202 tttgtacaaggggaggttcgtttcacatctctctaagaactagggaagataggcagaattcacactcctcatttgcacctatggaaagtggtaatgatac 301  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27154873 tttgtacaagaggaggttcgtttcacatctctctaagaactagggaagataggcagaattcacactcctcatttgcacctatggaaagtggtaatgatac 27154774  T
Q  302 gctcgtgc 309  Q
    ||||||||    
T  27154773 gctcgtgc 27154766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 27074475 - 27074418
Alignment:
Q  467 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaa 524  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  27074475 ctcaaagctagtaatctccaagatacaacaaccacttctcactaatattgtacctgaa 27074418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 27154566 - 27154509
Alignment:
Q  467 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaa 524  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  27154566 ctcaaagctagtaatctccaagatacaacaaccacttctcactaatattgtacctgaa 27154509  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 27074927 - 27074880
Alignment:
Q  12 gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27074927 gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg 27074880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 27155020 - 27154973
Alignment:
Q  12 gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27155020 gaatatggttgttacaactaaaacaagcaagtggtcatgaaagttgtg 27154973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 27074577 - 27074509
Alignment:
Q  405 attaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacacttgctcaaagc 474  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| |||||    
T  27074577 attaaaataaagaagaaggggagaatttatcg-ttattggctgaggtgtgcaaacacacttgcttaaagc 27074509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 405 - 474
Target Start/End: Complemental strand, 27154668 - 27154600
Alignment:
Q  405 attaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacacttgctcaaagc 474  Q
    ||||||||||||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||| |||||    
T  27154668 attaaaataaagaagaaggggagaatttatcg-ttattggctgaggtgtgcaaacacacttgcttaaagc 27154600  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Original strand, 6800180 - 6800237
Alignment:
Q  407 taaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacact 464  Q
    ||||||||||||||| || |||||||||||||  ||||||||||||||||||| ||||    
T  6800180 taaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaacgcact 6800237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 459
Target Start/End: Original strand, 6804622 - 6804674
Alignment:
Q  407 taaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaac 459  Q
    ||||||||||||||| || |||||||||||||  |||||||||||||||||||    
T  6804622 taaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaac 6804674  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 407 - 464
Target Start/End: Complemental strand, 41361525 - 41361468
Alignment:
Q  407 taaaataaagaagaacgggagaacttatcggttattggctgaggcgtgcaaacacact 464  Q
    ||||||||||||||| || |||||||||||||  ||||||||||||||||||| ||||    
T  41361525 taaaataaagaagaaaggaagaacttatcggtccttggctgaggcgtgcaaacgcact 41361468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Original strand, 34154038 - 34154095
Alignment:
Q  467 ctcaaagctagtgatctccaagatacaacaaccacttctcactaatattgtacgtgaa 524  Q
    ||||||||||||| |||||| ||||||||| |||||| ||||||| | || |||||||    
T  34154038 ctcaaagctagtgctctccaggatacaacagccacttttcactaacactgcacgtgaa 34154095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 456
Target Start/End: Complemental strand, 53833717 - 53833662
Alignment:
Q  401 tctcattaaaataaagaagaacgggagaacttatcggttattggctgaggcgtgca 456  Q
    ||||| ||||||||||||||| || ||||||||||| |  ||||||||||||||||    
T  53833717 tctcagtaaaataaagaagaaaggaagaacttatcgatcgttggctgaggcgtgca 53833662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 511
Target Start/End: Original strand, 2114951 - 2114995
Alignment:
Q  467 ctcaaagctagtgatctccaagatacaacaaccacttctcactaa 511  Q
    ||||||||||||  |||| |||||||| |||||||||||||||||    
T  2114951 ctcaaagctagtattctcaaagatacatcaaccacttctcactaa 2114995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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